Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g2016 ATGAAAGATCCAATGCTGTATGGTTGGGGATTTTCACTACATAAACCGACGCTCCACCTCTGTTTCGTCTCATTCTTCTCCAGTTCTCGTTCTCACTTTCTCTCCCTATCCTATCCTCCTCTGTTTCTCCAATATTCTCTTTTCTTCCCAATGACCAACCAAGCCTCTTCCCCTGAAACTGAAACTACCAGCACTAGCAACTCCTCTTCTTCTTGTTCTTCTTCTTCTTTCCCATCTTCTTCATCTGAATTATCAAACCCTACTTCCGATTCTCAGACCCAGAAAAGTCAATCTCAGAGCCAACAAGAACGGAGCACTAGCAGACCCAAGAGAGCCAGAGACCCTTCTAGCAAGCATCCATCGTACCATGGCGTCCGAATGCGAAACTGGGGCAAATGGGTCTCTGAAATTCGCGAGCCTCGCAAGAAATCACGAATCTGGCTTGGCACTTTCGCCACGCCGGCAATGGCTGCTCGAGCCCATGACGTCGCCGCTCTGAGCATCAAGGGTGAATCCGCCGTCCTCAACTTCCCTCACTTAGCTTCTCTGCTTCCCAGACCTGTCACGCTCGCCCCACGTGACATCCAATTCGCCGCCGCCGAAGCAGCTGCCATGGTGAAATTCGACCCTGCTCAGTCGCCGTCTTCTTCACCATCATCTGAAGAAGCAGAGTCTTCAGAGCTGAGTGAGATTGTGGAGTTGCCCAACGTTGAGGAGAGCTTTGAATCGGTGGAGTCGTCGAGGAGTCACGAGTTTGTGTGGGTTGAGTCCATGGATTGTTGGGTGTACGATCCTCCATTAATGGGATTAGAGGAAGAGGGTTTCTTTGACCAGTTTTATGGAGGAGAAGGCTTTGAGATATCAATTTGGGATTATTAA 879 0.496 MKDPMLYGWGFSLHKPTLHLCFVSFFSSSRSHFLSLSYPPLFLQYSLFFPMTNQASSPETETTSTSNSSSSCSSSSFPSSSSELSNPTSDSQTQKSQSQSQQERSTSRPKRARDPSSKHPSYHGVRMRNWGKWVSEIREPRKKSRIWLGTFATPAMAARAHDVAALSIKGESAVLNFPHLASLLPRPVTLAPRDIQFAAAEAAAMVKFDPAQSPSSSPSSEEAESSELSEIVELPNVEESFESVESSRSHEFVWVESMDCWVYDPPLMGLEEEGFFDQFYGGEGFEISIWDY 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g2016 292 SMART rav1_2 121 184 IPR001471 GO:0003700|GO:0006355
Prci12g2016 292 MobiDBLite consensus disorder prediction 54 105 - -
Prci12g2016 292 FunFam Ethylene-responsive transcription factor 2 120 179 - -
Prci12g2016 292 CDD AP2 120 180 IPR001471 GO:0003700|GO:0006355
Prci12g2016 292 Gene3D AP2/ERF domain 121 179 IPR036955 GO:0003700|GO:0006355
Prci12g2016 292 MobiDBLite consensus disorder prediction 210 225 - -
Prci12g2016 292 Pfam AP2 domain 120 170 IPR001471 GO:0003700|GO:0006355
Prci12g2016 292 MobiDBLite consensus disorder prediction 54 124 - -
Prci12g2016 292 ProSiteProfiles AP2/ERF domain profile. 121 178 IPR001471 GO:0003700|GO:0006355
Prci12g2016 292 PRINTS Ethylene responsive element binding protein signature 122 133 IPR001471 GO:0003700|GO:0006355
Prci12g2016 292 PRINTS Ethylene responsive element binding protein signature 144 160 IPR001471 GO:0003700|GO:0006355
Prci12g2016 292 MobiDBLite consensus disorder prediction 106 121 - -
Prci12g2016 292 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 96 241 - -
Prci12g2016 292 SUPERFAMILY DNA-binding domain 121 179 IPR016177 GO:0003677
Prci12g2016 292 MobiDBLite consensus disorder prediction 209 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g2016 Prci-Chr12 37759874 37760920 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g2016 82 266 AP2-EREBP Transcription Factor Family AT5G11590 53.234 1.36e-57 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Prci12g2016 AP2 9.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g2016 K09286 - pcin:129289324 464.536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci12g2016 12 37759874 37760920 Prci12g2016 12 37759874 37760920 ECH