Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g1999 ATGTCTAAACCATTGGAACATGATTACATAGGCTTAGCAGCATCAGAGAATCCGTCCATGGAAAAACACTCTGAGAAAATATCATCTCCTTCTTCTGCTGCTTCATCTACTCTTTCTACTGAGAAGGAAAATAGCTCTTCTCTTAATTTCAAAGAGACAGAGCTCAGACTGGGGCTTCCTGGAAGTGATTCTCCTCCTCCCGAGAGGAAATCAGGAAGTGGGATTTCTCTTTTCGGCAAGGATTTGCAGAGTAATCATAATAATAATGATAATACTGCTAATAATGGGTTTGGTTCTTCCTCTTTGAAGAACAACATGGCTGGAGCTAAGGGTTTTTCAGACGCCATTGATGTTGGGTCTTCTGGGAAATGGTGTTTCTCTGTGAGTGAGAAAATTGGGTCTGAAACTGATTTGGGGAAAGGAGCTTCTTTGTTTTCTCCCAGAGGAGGGAATGTTGTGAAGCCTCCTCTCGTTGCTGTAGAAGCTTCAACTACTTCTGAACAAAAAAGCGTTAGAGATGGTGGAATAGTTCAAGAGAAGAAGAAATCTCAGGTTGCTGTTGCTGCTACAAATGAACATGGAAGTGCTCCTCCCGCTGCTAAGGCACAGGTTGTGGGATGGCCACCAATTCGGTCTTTTCGAAAGAACAGCATGGCCTCTAATTCAACAAAGAATAACGATGAGGGTGAGGGTAAAGCTGGATTTGGCTGTCTCTATGTGAAGGTCAGCATGGATGGTGCTCCTTATCTCAGAAAGGTTGATCTCAAAACCTTCAGCAACTATCTGGAACTTTCTTCAGCTCTTGAGAAGATGTTCAGCTGCTTTACCATTGGTCAATGCAGTTCTGGAGGACTTGCTGTGAAAGGCGGCCTAAGCGAGAGCTCTTTGAGGGATCTTCTCCATGGTTCTGAGTATGTTCTTACTTATGAAGATAAGGATGGAGATTGGATGCTTGTTGGTGATGTTCCCTGGGGTAAGATGTTCACTGACTCGTGTAGAAGATTAAGGATCATGAAAGGTTCTGAAGCGATCGGACTCGCTCCAAGGGTGGTGGAAAAATCCAGGAGCCAAAACTAG 1077 0.4401 MSKPLEHDYIGLAASENPSMEKHSEKISSPSSAASSTLSTEKENSSSLNFKETELRLGLPGSDSPPPERKSGSGISLFGKDLQSNHNNNDNTANNGFGSSSLKNNMAGAKXGFSDAIDVGSSGKWCFSVSEKIGSETDLGKGASLFSPRGGNVVKPPLVAVEASTTSEQKSVRDGGIVQEKKKSQVAVAATNEHGSAPPAAKAQVVGWPPIRSFRKNSMASNSTKNNDEGEGKAGFGCLYVKVSMDGAPYLRKVDLKTFSNYLELSSALEKMFSCFTIGQCSSGGLAVKGGLSESSLRDLLHGSEYVLTYEDKDGDWMLVGDVPWGKMFTDSCRRLRIMKGSEAIGLAPRVVEKSRSQN 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g1999 359 Pfam AUX/IAA family 52 350 IPR033389 -
Prci12g1999 359 ProSiteProfiles PB1 domain profile. 238 341 IPR000270 GO:0005515
Prci12g1999 359 FunFam Auxin-responsive protein 233 351 - -
Prci12g1999 359 SUPERFAMILY CAD & PB1 domains 238 340 - -
Prci12g1999 359 MobiDBLite consensus disorder prediction 24 52 - -
Prci12g1999 359 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 47 346 IPR003311 GO:0005634|GO:0006355
Prci12g1999 359 MobiDBLite consensus disorder prediction 1 105 - -
Prci12g1999 359 MobiDBLite consensus disorder prediction 77 105 - -
Prci12g1999 359 Gene3D - 233 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g1999 Prci-Chr12 37648761 37651694 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g1999 242 349 B3 DNA Binding Superfamily AT4G23980 30.556 1.43e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Prci12g1999 AUX_IAA 8.1e-87 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g1999 K14484 - qsa:O6P43_018182 433.721