Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g1975 ATGGGCGTGGACATGTCGAATAACCCATCTCCAACTTCTCACACTAAAGATTTCTTCGCTTCTCCGGCTCTCTCTCTTAGCCTCGCTGGGATTTTCCGAAACAGGGAACCTGCTGTGGCTGCCGGGGCTACCGCGTCCAGCAGGGAGGTGGAGGAGGGGGACGAAGGGAGCGGCGGCGGAGGCGTAGGAGGCCGGCGAGATGAAACAGTGGAGATTAGCAGCGAGAACTCCGGCCACACGAGATCCAGATCGGACGATATTGATTTCGAAGGAGAAGGAGAGCATGACGATGACGATGACGGCGACGGAGACAACAAGAACAAGAAGAAGAAGCGGAAGAAATATCACAGGCACACTGCTGAGCAGATCAGAGAAATGGAAGCGCTTTTTAAAGAGTCACCACATCCTGATGAAAAGCAAAGGCAACAACTTAGCAAGCAACTAGGCCTTGCTCCTAGACAAGTCAAGTTCTGGTTCCAGAATCGTCGAACCCAAATCAAGGCAATACAAGAGCGTCACGAGAATTCATTATTGAAGTCAGAAATCGAGAAACTGAGAGAAGAAAACAAGCAAATGCGAGAGACCATCAACAAAGCTTGCTGTCCCAACTGTGGCATGGCCACCACAAGCAGAGACTCCGTCATGTCCACCGAAGAACAACAACTTCGCATCGAAAACGCCAAACTCAAAGCCGAGGTGGAGAAGTTAAGAGCAGTAATAGGGAAGTACCCGCAAGGGACGGCGTCTCCGTCGTGTTCAGGAGGGAACGAGCAAGAGAACAGAAGCTCGTTGGATTTCTACACTGGCATATTTGGGCTGGACAAGTCCAGGATCATGGAGATTGTGAATCAGGCCTTGGACGAACTGGTCAAAATGGCCACTGTGGGAGAGCCGTTGTGGGTTCGGAGCTTGGAGACTGGTCGGGAAATTCTCAACTATGATGAGTACGTGAAGGAGTTCGCGTCTTCTTCAGGTCAAGGTTCGAGCCATGCAAGGCCCAAAAGATCCATTGAAGCTTCCAGAGAAACTGGGGTTGTTTTTGTTGATCCCCCTCGCCTCGTTCAGAGATTCTTAGATGTGAATCAGTGGAAGGAGATGTTTCCATGGTTGATATCAAAAGCAGCAACTGTAGATGTCATCTGCAGCGGAGAAGGGCCTCACAGGAATGGTGCGGTTCATCTGATGTTCGCAGAGGTGCAAATGCTAACACCAATGGTGGCCACAAGAGAAGTGTATTTCGTGAGGTACTGCAAGCAACTAAGCGCAGAGCAGTGGGCGGTCGTGGACGTCTCCGTCGACAAGGTTGAAGACAACATCGATGCCTCCCTCGTGAAATGTCGAAAACGCCCCTCTGGCTGCATTATTCACGACAAGTCTAACGGCCATTGCAAGGTAACCTGGGTGGAGCACTTGGAATGCCAGAAGAGCACAGTCCACACAATGTACCGCACCATAGTTAACAGTGGCATGGCTTTTGGTGCAAGGCACTGGGTTGCCACCCTCCAACTTCAATGTGAACGTCTCGTTTTCTTCATGGCCACAAATGTTCCCATGAAGGATTCAACTGGTGTTGCCACGTTAGCAGGAAGGAAGAGCATGTTGAAGCTTGCCCAGAGAATGACAAGTAATTTCTGCCACGCTGTCGGAGCTTCAAGCTTCCATACATGGACCAAGGTTACCAGCAAAACAGGGGAAGACATCAGAATAAGTTCTAGGAAGAATTTGAATGATCCTGGGGAACCTCTAGGGGTGATCTTGTGTGCTGTTTCTTCTGTGTGGCTGCCAGTTTCTCCTAACGTTCTGTTTGATTTCTTGAGGGATGAAACTCGCAGATCTGAGTGGGATATCATGTCCAATGGTGCATCAGTGCAATCCATAGCAAACTTGGCCAAGGGACAGGATCGAGGCAATTCAGTAACCGTCCAAACAATTAAATCAAAAGATAACAGCATGTGGGTTCTGCAAGATAGCTGCACAAATGCATATGAATCGTTGGTGGTGTATGCTCCAGTGGACATCCCAGGGATTCAGTCTGTGATGACAGGATGTGACTCTAGCAATCTAGCCATACTTCCCTCAGGCTTTTCCATACTCCCTGATGGGCTGGATGCAAGGCCATTGGTCATAACTTCAAGAGAGGAAGAGGGAAACACAGAAGGAGGGTCTTTGCTCACAGTGGCTTTCCAGGCCCTTACTAATACATCTCCTACAGCTAAGTTAACTATGGAGTCTGTGGAATCTGTCAACACTCTTATATCTTGTACATTAAGAAATATCAGAACCAGCTTACAATGTGAGGATGGTTGA 2307 0.4902 MGVDMSNNPSPTSHTKDFFASPALSLSLAGIFRNREPAVAAGATASSREVEEGDEGSGGGGVGGRRDETVEISSENSGHTRSRSDDIDFEGEGEHDDDDDGDGDNKNKKKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKAIQERHENSLLKSEIEKLREENKQMRETINKACCPNCGMATTSRDSVMSTEEQQLRIENAKLKAEVEKLRAVIGKYPQGTASPSCSGGNEQENRSSLDFYTGIFGLDKSRIMEIVNQALDELVKMATVGEPLWVRSLETGREILNYDEYVKEFASSSGQGSSHARPKRSIEASRETGVVFVDPPRLVQRFLDVNQWKEMFPWLISKAATVDVICSGEGPHRNGAVHLMFAEVQMLTPMVATREVYFVRYCKQLSAEQWAVVDVSVDKVEDNIDASLVKCRKRPSGCIIHDKSNGHCKVTWVEHLECQKSTVHTMYRTIVNSGMAFGARHWVATLQLQCERLVFFMATNVPMKDSTGVATLAGRKSMLKLAQRMTSNFCHAVGASSFHTWTKVTSKTGEDIRISSRKNLNDPGEPLGVILCAVSSVWLPVSPNVLFDFLRDETRRSEWDIMSNGASVQSIANLAKGQDRGNSVTVQTIKSKDNSMWVLQDSCTNAYESLVVYAPVDIPGIQSVMTGCDSSNLAILPSGFSILPDGLDARPLVITSREEEGNTEGGSLLTVAFQALTNTSPTAKLTMESVESVNTLISCTLRNIRTSLQCEDG 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g1975 768 ProSitePatterns 'Homeobox' domain signature. 144 167 IPR017970 GO:0000981|GO:0006355
Prci12g1975 768 CDD START_ArGLABRA2_like 275 506 - -
Prci12g1975 768 SMART START_1 280 507 IPR002913 GO:0008289
Prci12g1975 768 Pfam Homeodomain 112 167 IPR001356 GO:0003677
Prci12g1975 768 MobiDBLite consensus disorder prediction 1 20 - -
Prci12g1975 768 CDD homeodomain 116 167 IPR001356 GO:0003677
Prci12g1975 768 ProSiteProfiles START domain profile. 271 510 IPR002913 GO:0008289
Prci12g1975 768 Pfam START domain 281 507 IPR002913 GO:0008289
Prci12g1975 768 SUPERFAMILY Bet v1-like 536 753 - -
Prci12g1975 768 Coils Coil 219 239 - -
Prci12g1975 768 Gene3D - 99 182 - -
Prci12g1975 768 MobiDBLite consensus disorder prediction 39 120 - -
Prci12g1975 768 ProSiteProfiles 'Homeobox' domain profile. 109 169 IPR001356 GO:0003677
Prci12g1975 768 SUPERFAMILY Homeodomain-like 100 170 IPR009057 -
Prci12g1975 768 Coils Coil 168 198 - -
Prci12g1975 768 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 108 763 IPR042160 -
Prci12g1975 768 FunFam Homeobox-leucine zipper protein GLABRA 2 280 506 - -
Prci12g1975 768 SUPERFAMILY Bet v1-like 273 507 - -
Prci12g1975 768 Gene3D - 285 504 IPR023393 -
Prci12g1975 768 FunFam Homeobox-leucine zipper protein HDG1 96 185 - -
Prci12g1975 768 MobiDBLite consensus disorder prediction 68 89 - -
Prci12g1975 768 SMART HOX_1 111 173 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g1975 Prci-Chr12 37447777 37455440 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g1975 72 767 Homeobox Transcription Factor Family AT1G79840 65.957 0.0 932
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Prci12g1975 START 2.6e-58 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g1975 K09338 - qsu:111988083 1224.54