Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g1961 ATGTGTCATGTTCTAGAACTGTTTACACGTGAACACTTAGCACAAGCAGCAAACGGGTTCTCAGAGTCAAACTTGCTGGGTCGAGGTGGTTTTGGCTATGTCCACAAAGGAGTCCTCCCAGATGGAAGAGTTGTCGCAATAAAGCAGCTAAAGCCTGGAAGCCAGCAAGGAGAGCGTGAGTTCAAGGCTGAAGTTGAGATCCTTAGCCGAGTTCATCACAGAAATCTTGTTTCCCTTGTTGGACACTGCTTTTCTGCAGCCGAGAGGACGATGATGCTTGTTTATGAGTTTGTCTCCAACAAGACTCTAGAATTTCACTTGCATGGAAAAGGCAGACCAACTATGGACTGGACAACAAGGATGAAGATTGCTATTGGATCTGCAAAAGGATTGGCTTATCTGCATGAAGACTGCAAACCCAGAGTCATACACAGTGACATCAAGGCAGCCAACATTCTTCTTAATAATGATTTTGAGCCAAAGGTTGCAGATTTTGGACTTGCCAAGTGTTTGTCAGACACTAATACCCATGTCTCTAATCAAGCAGCGGGGACCTTTGGATACATAGCTCCAGAATGTGTAGCTATCGGGAAAATCACAGAGAAGTCAGATGTCTTCTCCTTCGGTGTCGTGCTTTTGGAGTTGATTAGTGGACGGGAACCTCTCAGTAAGACTGAATCTTTCACAGATGGTATGGTTGATTGGGCAAGACCTTTACTGTTCCAAGCCCTGGAAAATGGAAACTTTGAAGGTATTGCTGATCCAAGGCTGCAGAATAATTACAACCCAGAAGAGATGAATCGAATGGTTGATTGCGCTGCAAATTGCGTGAGCCATTCAGCCGGGCATCGTCCTCGGATGAGCCAGATAGTTCAAGCTTTAGGGGGACATATTTGCCTGGATGATCTGGATGAACAGAGTACACCGAGGAGTTAA 936 0.4541 MCHVLELFTREHLAQAANGFSESNLLGRGGFGYVHKGVLPDGRVVAIKQLKPGSQQGEREFKAEVEILSRVHHRNLVSLVGHCFSAAERTMMLVYEFVSNKTLEFHLHGKGRPTMDWTTRMKIAIGSAKGLAYLHEDCKPRVIHSDIKAANILLNNDFEPKVADFGLAKCLSDTNTHVSNQAAGTFGYIAPECVAIGKITEKSDVFSFGVVLLELISGREPLSKTESFTDGMVDWARPLLFQALENGNFEGIADPRLQNNYNPEEMNRMVDCAANCVSHSAGHRPRMSQIVQALGGHICLDDLDEQSTPRS 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g1961 311 Pfam Protein tyrosine and serine/threonine kinase 24 294 IPR001245 GO:0004672|GO:0006468
Prci12g1961 311 SMART serkin_6 20 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci12g1961 311 ProSitePatterns Protein kinases ATP-binding region signature. 26 48 IPR017441 GO:0005524
Prci12g1961 311 SUPERFAMILY Protein kinase-like (PK-like) 7 294 IPR011009 -
Prci12g1961 311 ProSitePatterns Serine/Threonine protein kinases active-site signature. 142 154 IPR008271 GO:0004672|GO:0006468
Prci12g1961 311 ProSiteProfiles Protein kinase domain profile. 20 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci12g1961 311 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 2 97 - -
Prci12g1961 311 FunFam proline-rich receptor-like protein kinase PERK8 98 309 - -
Prci12g1961 311 Gene3D Phosphorylase Kinase; domain 1 1 97 - -
Prci12g1961 311 PIRSF ILK 9 300 - -
Prci12g1961 311 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 8 305 IPR047117 -
Prci12g1961 311 Gene3D Transferase(Phosphotransferase) domain 1 98 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g1961 Prci-Chr12 37264259 37274012 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g1961 8 294 Trihelix Transcription Factor Family AT5G38560 60.690 4.81e-125 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Prci12g1961 PK_Tyr_Ser-Thr 9.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g1961 - - pcin:129289313 634.409