LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci12g1960	ATGGAATCCACATACCCCACGGCTCCGGAGCAGACATTCGTCGATTCCCCAATAGACTCGCCTTCGATAGCTTTGCCGCCCTGGCCTCCATCCCCATTGATGCCGTCGTCATTGTCGGAGGCGTTGACACCTTCCCAGTCTACAGGGCCAATTCCTCCCACTACAGAGTCGCCGCCTCCCCTGACTCCACCGAGCCCGGCAAGATCGCATGTACCGTCATCAGGGTCACATGCAGAGCCACCTCCACAACCACCGGCGGCGGGGATAATTACAGGGACAGTGATTGGTTCATTGGTAATATTGGGATTATTATGTGTGTGTTTGTTTATATGGATAAAGAGGAGAAGGATCAGACTCTCTGGATTGGAGGACCCCTCTCCACAGCCACACCAATCTAATGCTGATCAGTTTGGTGGCCCGCCCCAGCAATGGCAACATGGCGTTCCTCCTCCAACCAACGGTGGAGCAACGTTGCTTCCAAAGCCAAGTCCGCCCCCTGGAGTTCTGTTGAATCAGCAAGCATCGTCCAATAATGTCACATCTCCCCTATTGTGTTCTGCAAGTGGTACAAGTTTGGAATCTCAGAGACCATACCATGCACGATCTCCTGCCATTACCTTGGGATTGTCACAAAGCACGTTTACACATGAAGAACTCTCATTTGCAACAAATGGATTCTCAGACTCAAATCTTCTTGGTCAAGGTGGGTTTGGCTATGTCCATAAAGGAGTCCTCCCAAATGGAAAAACCGTTGCAGTTAAGCAGCTGAAATCTGAGAGCAGACAGGGGGAACGTGAGTTCCAGGCTGAAGTGGAGGTCATCAGCCGAGTCCATCACCGACATCTTGTTTCCTTGGTTGGATACTGCATTGCCGAAGCCCAGAGGATGCTTGTATATGAGTTTGTCCCAAACAATACACTAGAATTCCATTTGCATGGAAAGGATAGAATAACAATGGACTGGGCAACAAGGATTAAAATTGCTATTGGGTCTGCAAAGGGATTGGCATACCTGCACGAGGACTGTCACCCAAAAATCATACATCGTGACATCAAGGCATCTAACATCCTTCTTGATGACAATTTTGAGGCCAAGGTTGCAGATTTTGGACTTGCCAAAATTTCATCAGATGCTGATATCCATGTCTCCACTCGAGTAATGGGAACCTTTGGATACCTGGCTCCAGAATATGCTGCTAGTGGAAAACTCACTGAGAAGTCAGATGTCTTCTCCTTTGGTGTTGTTCTTTTGGAGTTGATTACAGGGCGAAAACCTGTAGATAAAACTGAGTCTTTCACAGATGACAGTATGGTTGAGTGGGCAAGACCACTACTTTTTCAAGCTTTGGAAAATGGCAACTTTGATGTCCTTGCTGATCCAAGGTTGCAGAAGAGTTACAACTCTGATGAGATGCTTCGAATGATTGCCTGTGCCACAAATTGTGTGCGCCATTCAGCTAGGCATCGGCCTCGAATGAGCCAGGTAGTTCGGGCTCTAGAAGGCAATATTTCTTTGGATGATCTGAATGAGGGAAGCACTCCTGGGCACAGCAGAGCATTTGGTTCCTTTGCAGGTTCAGGTTATGATACTGGCCAGTACAATAAGGACCTAAAGAAGTTCAGGAAGCTGGCACTAGAGCAAGAAACTAATGAATACAGTGGGCCCAGTAGCGATTATGGTCAACATCAGTCAGCCTCAAGCAGTTCAGGCTTGCAAAATACGCAAGAAAAATAA	1734	0.4769	MESTYPTAPEQTFVDSPIDSPSIALPPWPPSPLMPSSLSEALTPSQSTGPIPPTTESPPPLTPPSPARSHVPSSGSHAEPPPQPPAAGIITGTVIGSLVILGLLCVCLFIWIKRRRIRLSGLEDPSPQPHQSNADQFGGPPQQWQHGVPPPTNGGATLLPKPSPPPGVLLNQQASSNNVTSPLLCSASGTSLESQRPYHARSPAITLGLSQSTFTHEELSFATNGFSDSNLLGQGGFGYVHKGVLPNGKTVAVKQLKSESRQGEREFQAEVEVISRVHHRHLVSLVGYCIAEAQRMLVYEFVPNNTLEFHLHGKDRITMDWATRIKIAIGSAKGLAYLHEDCHPKIIHRDIKASNILLDDNFEAKVADFGLAKISSDADIHVSTRVMGTFGYLAPEYAASGKLTEKSDVFSFGVVLLELITGRKPVDKTESFTDDSMVEWARPLLFQALENGNFDVLADPRLQKSYNSDEMLRMIACATNCVRHSARHRPRMSQVVRALEGNISLDDLNEGSTPGHSRAFGSFAGSGYDTGQYNKDLKKFRKLALEQETNEYSGPSSDYGQHQSASSSSGLQNTQEK	577

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci12g1960	577	ProSitePatterns	Protein kinases ATP-binding region signature.	232	254	IPR017441	GO:0005524
	Prci12g1960	577	FunFam	Proline-rich receptor-like protein kinase PERK1	302	510	-	-
	Prci12g1960	577	Gene3D	Phosphorylase Kinase; domain 1	188	301	-	-
	Prci12g1960	577	MobiDBLite	consensus disorder prediction	546	577	-	-
	Prci12g1960	577	MobiDBLite	consensus disorder prediction	1	18	-	-
	Prci12g1960	577	MobiDBLite	consensus disorder prediction	125	140	-	-
	Prci12g1960	577	Gene3D	Transferase(Phosphotransferase) domain 1	302	510	-	-
	Prci12g1960	577	MobiDBLite	consensus disorder prediction	51	67	-	-
	Prci12g1960	577	MobiDBLite	consensus disorder prediction	123	173	-	-
	Prci12g1960	577	ProSiteProfiles	Protein kinase domain profile.	226	505	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci12g1960	577	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	346	358	IPR008271	GO:0004672\|GO:0006468
	Prci12g1960	577	FunFam	proline-rich receptor-like protein kinase PERK1	204	301	-	-
	Prci12g1960	577	SMART	serkin_6	226	499	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci12g1960	577	PANTHER	PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4	104	548	IPR047117	-
	Prci12g1960	577	MobiDBLite	consensus disorder prediction	1	85	-	-
	Prci12g1960	577	MobiDBLite	consensus disorder prediction	549	577	-	-
	Prci12g1960	577	Pfam	Protein tyrosine and serine/threonine kinase	230	499	IPR001245	GO:0004672\|GO:0006468
	Prci12g1960	577	SUPERFAMILY	Protein kinase-like (PK-like)	204	499	IPR011009	-
	Prci12g1960	577	MobiDBLite	consensus disorder prediction	36	50	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci12g1960	Prci-Chr12	37239120	37246698	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci12g1960	52	570	Trihelix Transcription Factor Family	AT1G70460	50.654	2.19e-166	488

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_PERK-1	Prci12g1960		PK_Tyr_Ser-Thr	3.7e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci12g1960	-		-	ccaj:109808169	693.345