LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci12g1959	ATGTCTTCGCCGTCTCCGGAAACATCTCAGGCACCCAACTCCACGTCTCCTCCTCCTTCGCCTCTTGTCACCACCAATGACACCTCTCCTCCAGCTCCGAATATTTCCACGTCACCTACCGCGACGCCGGCGGTGCCACCTCCTCCGGTCGAGCTTCCGACGCTGGTATCGGAATCAAACGGAATGTCCAGGGCTACAGTAATTGGACTAGTTATTGGGACTGTATTTGGCTCACTGCTCATGCTCGTTTGTGTGGGCATTTGCGCTTTTTGCTATAAAAGGAGAAAGCGGAGGAGGATGAGAAAACATGGGTTGGACGATTACTCTGCTGATCCTCCATCACAACCCAAAGCTGATCAGTTTGGTGGCCCGCCCCAGCAATGGCAGCATGGCATTCCTCCTCCAACCAATGGTCGAGCAACATTGCCTCCAAAGCCAAGTCCACCACCTGGAGTTCTGTTGAATCAGCAAGCATCGTCCACTAATGTCACTTCTCCCCCAATATATTCTACAAGTGGTACAAGTTTGGAATCTGAGAGACCATCCCATGCACCATCTCATGCGGTCACTTTGGGATTGTCACAAAGCTCGTTTACATATGAAGAACTTGCATTTGCAACAAATGGATTCTCAGACTCCAATCTTCTTGGTCAAGGTGGGTTTGGCTATGTCCATAAAGGAGTCCTCCCAAATGGAAAAACCGTTGCAGTTAAGCAGCTGAAATCTGAGAGCAAACAGGGGGAGCGTGAGTTCCAGGCTGAAGTGGAGGTCATCAGCCGAGTCCATCACCGACATCTTGTTTCCTTAGTTGGATACTGCATTGCTGGAGCCCAGAGGATGCTTGTATATGAGTTTGTCCCAAACAATACACTAGAATTCCATTTGCATGGAAAGGATAGAATAACAATGGACTGGGGAACAAGGATGAAAATTGCTATTGGGTCTGCAAAGGGATTGGCATACCTGCACGAGGACTGTCACCCAAAAATCATACATCGTGACATCAAGGCATCTAACATTCTTCTTGATGACAATTTTGAGGCGAAGGTTGCAGATTTTGGACTTGCCAAGTTTTCATCAGATGCTGATACCCATGTCTCCACTCGAGTAATGGGAACCTTTGGATACCTGGCTCCAGAATATGCTGCTAGTGGAAAACTCACTGAGAAGTCAGATGTCTTCTCCTTTGGTGTTGTTCTTTTGGAGTTGATTACAGGGCGAAAACCTGTAGATAAAACTGAGTCTTTCACAGATGACAGTATGGTTGAGTGGGCAAGACCATTACTTTTTCAAGCTTTGGAAAATGGCAACTTTGATGTCCTTGCTGATCCAAGGTTGCAGAAGAGTTACAACTCTGATGAGATGCTTCGAATGATTGCCTGTGCTGCAAATTGTGTGCGCCATTCAGCTAGGCATCGGCCTCGAATGAGCCAGGTAGTTCGTGCTCTAGAAGGCAATATTTCTTTGGATGATCTGAATGAGGGAAGCACAGCTGGGCACAGCAGAGCATTTGGCTCCTTTGAAAGTTCAGGTTATGATACTGGCCAATACAATGAGGACCTAAAGAAGTTCAGAAAGCTGGCACTAGAGCAAGAAACTAGTGAATACAGTGGGCCCAGTAGCGATTATGGTCAACATCAGTCAGCCTCAAGCAGTTCTGGCCTGCAAAATGCACAAGAAAAATAA	1686	0.4709	MSSPSPETSQAPNSTSPPPSPLVTTNDTSPPAPNISTSPTATPAVPPPPVELPTLVSESNGMSRATVIGLVIGTVFGSLLMLVCVGICAFCYKRRKRRRMRKHGLDDYSADPPSQPKADQFGGPPQQWQHGIPPPTNGRATLPPKPSPPPGVLLNQQASSTNVTSPPIYSTSGTSLESERPSHAPSHAVTLGLSQSSFTYEELAFATNGFSDSNLLGQGGFGYVHKGVLPNGKTVAVKQLKSESKQGEREFQAEVEVISRVHHRHLVSLVGYCIAGAQRMLVYEFVPNNTLEFHLHGKDRITMDWGTRMKIAIGSAKGLAYLHEDCHPKIIHRDIKASNILLDDNFEAKVADFGLAKFSSDADTHVSTRVMGTFGYLAPEYAASGKLTEKSDVFSFGVVLLELITGRKPVDKTESFTDDSMVEWARPLLFQALENGNFDVLADPRLQKSYNSDEMLRMIACAANCVRHSARHRPRMSQVVRALEGNISLDDLNEGSTAGHSRAFGSFESSGYDTGQYNEDLKKFRKLALEQETSEYSGPSSDYGQHQSASSSSGLQNAQEK	561

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci12g1959	561	SUPERFAMILY	Protein kinase-like (PK-like)	186	483	IPR011009	-
	Prci12g1959	561	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	330	342	IPR008271	GO:0004672\|GO:0006468
	Prci12g1959	561	MobiDBLite	consensus disorder prediction	36	53	-	-
	Prci12g1959	561	MobiDBLite	consensus disorder prediction	530	561	-	-
	Prci12g1959	561	MobiDBLite	consensus disorder prediction	152	181	-	-
	Prci12g1959	561	MobiDBLite	consensus disorder prediction	1	56	-	-
	Prci12g1959	561	Gene3D	Phosphorylase Kinase; domain 1	171	285	-	-
	Prci12g1959	561	FunFam	proline-rich receptor-like protein kinase PERK1	188	285	-	-
	Prci12g1959	561	ProSitePatterns	Protein kinases ATP-binding region signature.	216	238	IPR017441	GO:0005524
	Prci12g1959	561	MobiDBLite	consensus disorder prediction	11	26	-	-
	Prci12g1959	561	MobiDBLite	consensus disorder prediction	137	151	-	-
	Prci12g1959	561	FunFam	Proline-rich receptor-like protein kinase PERK1	286	494	-	-
	Prci12g1959	561	Gene3D	Transferase(Phosphotransferase) domain 1	286	497	-	-
	Prci12g1959	561	SMART	serkin_6	210	483	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci12g1959	561	MobiDBLite	consensus disorder prediction	103	187	-	-
	Prci12g1959	561	ProSiteProfiles	Protein kinase domain profile.	210	489	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci12g1959	561	PANTHER	PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4	79	532	IPR047117	-
	Prci12g1959	561	MobiDBLite	consensus disorder prediction	533	561	-	-
	Prci12g1959	561	Pfam	Protein tyrosine and serine/threonine kinase	214	483	IPR001245	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci12g1959	Prci-Chr12	37221192	37226522	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci12g1959	30	554	Trihelix Transcription Factor Family	AT1G70460	51.321	1.67e-165	486

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_PERK-1	Prci12g1959		PK_Tyr_Ser-Thr	1.2e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci12g1959	-		-	aip:107617256	731.095