Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g1934 ATGTCATCGGAGAGTACTACAACCACCCGCTCCTCCCAGCCGGACGCCGCGGAGTTGAACCTGAAGGATACAGAACTCACCCTCGGCCTTCCCGGCGCCAATAATAATACCACCAGCTCTAAACGTGCCTTCTCAGAAACCAACATCTTTGGCTCAACCTCGTCCTCAACTAGTACCCCACCACCTAAGACACAGGCGGTGGGGTGGCCGCCGGTGAGGGCGAGTAGGAAGAACGTGTTGAAGAGCTGCAAATTTGTGAAGGTGGCGGTGGACGGAGCTCCATATCTGAGGAAGGTAGATCTTGAGAAGTATGAGAGCTATGATCAGCTGCTCACGAGTTTGGAGGCCATGTTTGGTTCCTTGACAATTCGCAATCATTTGAATGAGAGGAAGATGATGGACCTGGGAAATGGGGCAGAGTACGTGCCTACGTATGAGGACAGAGATGGCGACTGGATGCTTGTGGGAGATGTACCTTGGAAGATGTTTGTTGAATCCTGCAAAAGAATCAGGTTGATGATAAAGTCAGAAGCTACTGGCTTAGAAATTGGGAGAAGAGGGTTGAAGTTGGAAGAGAAAAAGTGTAGTAATTAA 594 0.4983 MSSESTTTTRSSQPDAAELNLKDTELTLGLPGANNNTTSSKRAFSETNIFGSTSSSTSTPPPKTQAVGWPPVRASRKNVLKSCKFVKVAVDGAPYLRKVDLEKYESYDQLLTSLEAMFGSLTIRNHLNERKMMDLGNGAEYVPTYEDRDGDWMLVGDVPWKMFVESCKRIRLMIKSEATGLEIGRRGLKLEEKKCSN 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g1934 197 ProSiteProfiles PB1 domain profile. 83 177 IPR000270 GO:0005515
Prci12g1934 197 Coils Coil 188 197 - -
Prci12g1934 197 MobiDBLite consensus disorder prediction 1 70 - -
Prci12g1934 197 Pfam AUX/IAA family 81 181 IPR033389 -
Prci12g1934 197 FunFam Auxin-responsive protein 78 185 - -
Prci12g1934 197 Gene3D - 78 186 - -
Prci12g1934 197 MobiDBLite consensus disorder prediction 1 18 - -
Prci12g1934 197 MobiDBLite consensus disorder prediction 29 63 - -
Prci12g1934 197 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 19 179 IPR003311 GO:0005634|GO:0006355
Prci12g1934 197 SUPERFAMILY CAD & PB1 domains 76 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g1934 Prci-Chr12 36943072 36944545 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g1934 81 190 B3 DNA Binding Superfamily AT1G30330 34.234 3.62e-10 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Prci12g1934 AUX_IAA 2.4e-45 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g1934 K14484 - gmx:100500488 230.72