Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g1905 ATGGATGTTACCTCTCTCGGACCAAATAGTAACACCCAAACTGATCAATATCCTTTGCTGATGGAGCAGCCAGAAGCCCATAATGGTCATCAGCATGTAATTGACATTACAATAAATAGTAATGACTTATCCAGCTCTACTCAAGATGATCAACATGCTGAAATGCATTTGCCACAAAATGAAGATCAACCATCAGTTGGCTCACAAGTTTCTGCTCATCAATCATCTTCACCTTCATCATCCAGGTTAAACTCTACAAATTCCTCATCGACAAGAAGAGGTGAGGGATATGGTCATCACAGAAGAAGCCCACTGAATTCTGGACTATGGATTTCTGTTGAGCTTGTAGTCACTGTGGGTCAGATCATAGCATCTATTGTTGTCTTGTCAATATCCAGGAATGAAAATCCCAAAGCTCCACTATTTGCATGGATTGTGGGTTATGCATCTGGTTGTGTTGCTACGCTTCCTATTCTTTACTGTCGTTATCAAAACCGTAATCAAAACAGTGGACGAGATTTATCTCAAACATCTCAAGGATCTTCTGGAGGCAATCCCTCTGAACGGACATCTTATACTGCCATCTCTGTTGCTCATGTTTCAGACGAAGAGAATGGTCGTGCTACAGAACCAGCTACAGGAAACTCTGGGATTCCTGGAGCCTTTAGTTCTAGGTTTAATGGTTTAGCAGACCATTTCAAGATGGCCTTAGATTGCTTCTTTGCAGTTTGGTTTGTTGTGGGCAACGTTTGGATCTTTGGAGGTCATTCTTCGCCTTCTGATGCTCCAAAATTATATAGGTTATGTATAGTGTTTCTTACCTTCAGTTGCATTGGATATGCTATGCCATTTATACTATGTGCAACAATTTGTTGCTGCCTACCTTGCATAATTTCTGTTTTGGGAATTCGAGAGGACTTTTCTCAAACTAGAGGGGCCACAGTTGAATCTATTAATGCCCTGCCTATATATAAGTTCAGATTGAAGAAAAACGAAAATAGTGATGATCAGAATGGAAATACAGCTATAGATGAAGGAGGGACCTTGGCTGCGGGGACAGAGAAGGAGCGATCCATATCAGGAGAAGATGCTGTTTGTTGCATTTGTTTGGCAAAATATGCCGATGATGATGAGCTTAGGGAGCTACCCTGCTTCCATGTCTTTCATGTTGAGTGTGTTGACAAATGGCTCAAGATAAATGCATCTTGTCCTCTCTGTAAAAGCGAGGTCGGTGTGAGTGTACTTTCGGCAGGGGAGTCCAGTCAGCATTAG 1272 0.4182 MDVTSLGPNSNTQTDQYPLLMEQPEAHNGHQHVIDITINSNDLSSSTQDDQHAEMHLPQNEDQPSVGSQVSAHQSSSPSSSRLNSTNSSSTRRGEGYGHHRRSPLNSGLWISVELVVTVGQIIASIVVLSISRNENPKAPLFAWIVGYASGCVATLPILYCRYQNRNQNSGRDLSQTSQGSSGGNPSERTSYTAISVAHVSDEENGRATEPATGNSGIPGAFSSRFNGLADHFKMALDCFFAVWFVVGNVWIFGGHSSPSDAPKLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVLGIREDFSQTRGATVESINALPIYKFRLKKNENSDDQNGNTAIDEGGTLAAGTEKERSISGEDAVCCICLAKYADDDELRELPCFHVFHVECVDKWLKINASCPLCKSEVGVSVLSAGESSQH 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g1905 423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 344 413 IPR013083 -
Prci12g1905 423 Pfam Ring finger domain 366 407 IPR001841 -
Prci12g1905 423 MobiDBLite consensus disorder prediction 61 93 - -
Prci12g1905 423 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 410 - -
Prci12g1905 423 MobiDBLite consensus disorder prediction 41 103 - -
Prci12g1905 423 SMART ringv_2 365 407 IPR011016 GO:0008270
Prci12g1905 423 SUPERFAMILY RING/U-box 360 412 - -
Prci12g1905 423 FunFam E3 ubiquitin-protein ligase 349 415 - -
Prci12g1905 423 MobiDBLite consensus disorder prediction 169 189 - -
Prci12g1905 423 ProSiteProfiles Zinc finger RING-type profile. 366 407 IPR001841 -
Prci12g1905 423 SMART ring_2 366 406 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g1905 Prci-Chr12 36678246 36682609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g1905 1 413 C3H Transcription Factor Family AT1G80400 57.971 1.41e-168 477
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g1905 - - gmx:100819729 670.233