Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g1904 ATGGGTCTCGGACTTGAAATCACAGAGCTCAGGTTGGGTCTTCCCGGCGGAGATCAGCCTGGTGCGGCGGGTAAGAGTGCTACTGAGACGACCAAGAAGAGGGTGTTCTCGGAGATTGGTGCCAGCAGCGGTGGCGGCCAGGATGATGAAAATAGCTGCTCTGGTGGTGGTGACTCGAAAACACCGGCGAAGAACGAGGTGGTGGGGTGGCCGCCGGTAGGGTCGTACAGGAGGAGAAACAGCATGAGTGATCAGCAGCAGGGTTCGAAAATTTACGTGAAGGTTAGTATGGATGGAGCTCCTTTCTTGCGTAAAGTTGATTTGGGTTTGCAAAAAGGCTACTCTGAGTTAGCAACCGCGTTGGAGAAGCTCTTCGATTGCCATGGAATCAGAGAGGCATTGAAGGGCGTGGACAGTTCTGAACACGTTCTCATTTATGAGGACAGTGATGGTGACTGGATGCTTGTTGGAGATGTTCCTTGGCAAATGTTTATAGAGTCATGCAAGAGGCTGAGGATCATGAAGAGGTCGGAGACAAAAGGCTTTGATCTGCAGCCAAAAGGTGAAAAGGGTCTATGA 579 0.513 MGLGLEITELRLGLPGGDQPGAAGKSATETTKKRVFSEIGASSGGGQDDENSCSGGGDSKTPAKNEVVGWPPVGSYRRRNSMSDQQQGSKIYVKVSMDGAPFLRKVDLGLQKGYSELATALEKLFDCHGIREALKGVDSSEHVLIYEDSDGDWMLVGDVPWQMFIESCKRLRIMKRSETKGFDLQPKGEKGL 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g1904 192 Pfam AUX/IAA family 29 181 IPR033389 -
Prci12g1904 192 ProSiteProfiles PB1 domain profile. 90 178 IPR000270 GO:0005515
Prci12g1904 192 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 4 179 IPR003311 GO:0005634|GO:0006355
Prci12g1904 192 Gene3D - 84 186 - -
Prci12g1904 192 MobiDBLite consensus disorder prediction 44 59 - -
Prci12g1904 192 MobiDBLite consensus disorder prediction 1 87 - -
Prci12g1904 192 FunFam Auxin-responsive protein 85 186 - -
Prci12g1904 192 SUPERFAMILY CAD & PB1 domains 80 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g1904 Prci-Chr12 36658347 36661178 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g1904 83 180 B3 DNA Binding Superfamily AT4G23980 40.816 2.20e-14 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Prci12g1904 AUX_IAA 7.1e-47 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g1904 K14484 - gmx:547784 241.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci12g1904 12 36658347 36661178 Prci13g0967 13 8043887 8048243 CCT