Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g1868 ATGCATCATCTTCATCAGATGACAAATGGGTTTTTCTCGGATATGAGTACGAGAGCTTCCTCAATTTCTGCGCCACCAAATAGATTGATACGCAATAACAACTTCACAGCCATGAGTAGCGCTTCTTCTTCCGCTTGTAAATTTGATGGTAATCAGAAGTCCCCTGCTTCGTTTGAATTTGAATACGAATACCCATCGTTCAAGAAGCCCGCGAATCCATCGACAGTCCCAAATTCGAGGGCACAGGTTCTGAACGAGGCGAAGGCCCGCTATTTCAAGACTCAACTCTGCAGAAGGTTTAGACAAGGAATTTGTACGCTTGGGTCCGATTGTACCTTTGCTCATTGCGTTGGAGAGCTTCGAAGGCAAGAAATTGGTAATGACGATAGAACATTTCAGGAACCCAGACTATGCAGAATGTTCTATCAAGGGCAACAATGCTCCTATGGAAACGCCTGCCGTTTCCTTCATACAAGACCTGGCAGTGTCAATTCTAGAGACGCTACAACAGCAGAAGTGATTCCTACTGGACATGGTAAAAGAAAAAATGATCAATTAGAATGTAAGAGTGGTTTTGATGAGAGTTCTGATGCTGAAGTGAATCCGAAGAGAGTGCAGCTGAAAACAAAGCTGTGCATCAAGTGGGAGATGAAGAGGAATTGCCCGCATGGACGTATGTGTCGCTTTGCTCATGGGCAAGCAGTTAGCAGAGCCATAGAGATTATCTACTTCAAGAAACTCAGATTCCTCTTTTCAATGCAGAATTAG 768 0.4401 MHHLHQMTNGFFSDMSTRASSISAPPNRLIRNNNFTAMSSASSSACKFDGNQKSPASFEFEYEYPSFKKPANPSTVPNSRAQVLNEAKARYFKTQLCRRFRQGICTLGSDCTFAHCVGELRRQEIGNDDRTFQEPRLCRMFYQGQQCSYGNACRFLHTRPGSVNSRDATTAEVIPTGHGKRKNDQLECKSGFDESSDAEVNPKRVQLKTKLCIKWEMKRNCPHGRMCRFAHGQAVSRAIEIIYFKKLRFLFSMQN 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g1868 255 ProSiteProfiles Zinc finger C3H1-type profile. 132 160 IPR000571 GO:0046872
Prci12g1868 255 SUPERFAMILY CCCH zinc finger 132 159 IPR036855 GO:0046872
Prci12g1868 255 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 208 233 IPR000571 GO:0046872
Prci12g1868 255 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 92 116 IPR000571 GO:0046872
Prci12g1868 255 ProSiteProfiles Zinc finger C3H1-type profile. 91 118 IPR000571 GO:0046872
Prci12g1868 255 SUPERFAMILY CCCH zinc finger 90 121 IPR036855 GO:0046872
Prci12g1868 255 Gene3D - 201 237 - -
Prci12g1868 255 SMART c3hfinal6 206 233 IPR000571 GO:0046872
Prci12g1868 255 SMART c3hfinal6 91 117 IPR000571 GO:0046872
Prci12g1868 255 SMART c3hfinal6 134 159 IPR000571 GO:0046872
Prci12g1868 255 Pfam CCCH-type zinc finger 136 157 IPR041367 -
Prci12g1868 255 SUPERFAMILY CCCH zinc finger 206 234 IPR036855 GO:0046872
Prci12g1868 255 PANTHER CCCH ZINC FINGER/TIS11-RELATED 30 161 IPR045877 GO:0003729
Prci12g1868 255 ProSiteProfiles Zinc finger C3H1-type profile. 206 234 IPR000571 GO:0046872
Prci12g1868 255 Gene3D - 86 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g1868 Prci-Chr12 36288950 36291064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g1868 93 158 C3H Transcription Factor Family AT1G68200 36.620 1.95e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Prci12g1868 zf-CCCH 5.9e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g1868 - - pcin:129288651 494.582