Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g1841 ATGGTGCAGTCAAAGAAGTTCAGAGGTGTCAGACAGCGTCATTGGGGCTCTTGGGTCTCTGAGATCCGCCATCCTTTATTGAAAAGAAGGGTGTGGCTAGGGACGTTCGATACTGCAGAAGAAGCAGCACGAGCTTATGATGAAGCAGCCATTTTGATGAGCGGAAGAAACGCCAAAACAAACTTCCCAGTGGCCCCCAATAATCAAAATTACCATTCTTCTTCGTCGTCGTCGTCTTCTTCCTCATCATTTTCTGAAGCTCTCAGTGCAAAGCTTCGGAAGTGCTGTAAATCGCCTTCGCCATCTCTGACTTGCTTGAGGTTGGACACAGAGAACTGTCACATCGGAGTGTGGCAGAAGCGAGCAGGGCCTCGATCTGACTCCAACTGGGTCATGATGGTAGAGCTGGAAAGGAAGAAACTTGGAGGTTCAGAGGAGGCGACGTCGGAGGAGGAGTCGCCGGCGCTGGAGATAACGGAGGAGAAGGTGAAACCAGAAGAAGAGAACAGCGAGCTGGACGAGGAGCAGAAGATGGCGTTGCAGATGATAGAAGAACTCCTTAATGGGAACTGA 573 0.5061 MVQSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFDTAEEAARAYDEAAILMSGRNAKTNFPVAPNNQNYHSSSSSSSSSSSFSEALSAKLRKCCKSPSPSLTCLRLDTENCHIGVWQKRAGPRSDSNWVMMVELERKKLGGSEEATSEEESPALEITEEKVKPEEENSELDEEQKMALQMIEELLNGN 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g1841 190 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Prci12g1841 190 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Prci12g1841 190 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Prci12g1841 190 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Prci12g1841 190 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Prci12g1841 190 MobiDBLite consensus disorder prediction 141 175 - -
Prci12g1841 190 MobiDBLite consensus disorder prediction 63 82 - -
Prci12g1841 190 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Prci12g1841 190 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Prci12g1841 190 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Prci12g1841 190 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 159 - -
Prci12g1841 190 MobiDBLite consensus disorder prediction 155 175 - -
Prci12g1841 190 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g1841 Prci-Chr12 36156742 36158285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g1841 1 190 AP2-EREBP Transcription Factor Family AT1G15360 65.347 5.62e-80 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Prci12g1841 AP2 1.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g1841 - - gmx:100796962 269.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci12g1841 12 36156742 36158285 Prci12g1841 12 36156742 36158285 ECH