Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g1840 ATGGCAGAAACTCATCTTCATGGGACTCTTCACGCCACCATTCATGAAGTGGATAAGTTAAGTGCCAGTGAAGATACCAGTATTTTCAGCATGCTTAAGCAAAAAATTGAAGATACAGTCGGTGTTGGAAAGGGATCATCTCAAGTGTACGCCACCATTGATCTGGAGAAAGCAAGAGTGGGAAGAACTAGAGTGTTGGAGAACGCAGATTCCAGTCTCAGGTGGGAAGAATCGTTCCACATCTATTGTGCCCACGTGGCATCCAATGTCATTTTCACCGTCAAAGGCGTCAACAAGATCGGCGCTACCTTAATAGGCCGAGCCTACGTCCCCGTCCACAACATCCTTGCCGGCGACATCCATGATGATTGGCTCGATATCTTAAACGAGGACAAAGAACCAATCGGCTCCAAAATCCACGTCAAGCTCCAATACTTCGACGTCACAAAAGACAAAAACTGGAATCGTGGTATTCGGAGCCCTAAATACCCGGGTGTACCCTACACTTTCTTCACGCAGAGACAAGGTTGTAAGGTTACCTTGTACCAAGACGCTCATGTCCCTGAAGATTTCATCCCCAGAATCCCCCTCTCAGGAGGCAAGTATTACGAACCTCATAGATGTTGGGAGGATGTTTTCGAAGCAATTCGTAATGCCAAGCATCTGATATACATCACCGGTTGGTCTGTTTACACTGAGATTAAGCTTGTGAGGGATGCTAAGAGGCCAAAAGATGGAGGTCATGTGACACTAGGACAGCTTCTGAAGGATAAAGCAAGTGAAGGTGTTAGGGTTGTAATGCTTGTTTGGGACGATAGAACTTCGGTTAGTCTGTTGAAAAAAGATGGTTTAATGGCAACACATGATGAAGAGACTGAGATATTCTTTCAAGACACTCAAGTGCACTGTGTTTTATGCCCTCGTGATCCCGACGACGGCGCCGGAAGTATAATTCAGGACGTCCAGATTTCTACTATGTTCACTCATCATCAGAAGATCGTCGTGGTCGACAATGAGCTTCCGGGACGAGGATCATCAAGCAAGAGAAGAATAGTGAGTTTCGTCGGAGGGCTTGATTTATGCGATGGAAGATACGACACTGCATTTCATTCGCTTTTCAGAACGTTGGACACTGCTCATCATGATGACTTTCATCAACCTAACTTCCCCGGCGCCGACATCAGCAAAGGTGGACCCAGGGAGCCATGGCACGACATACATTCTCGTCTAGAAGGACCGATTGCTTGGGATGTATTATTTAACTTTGAACAGAGATGGAAGAAGCAAGGTAGGAAGGATGTGCTTGTGTCTCACGAAGTGCTCGAGGAGATAGTTATTCCGCCGTCTCCGGTGATGTTCCCGGAGGACCACGAGACATGGAATGTTCAGTTGTTCCGATCTATCGACGGTGGCGCCGCCTTCGGTTTCCCAGAGAGCCCTGAAGAAGCCGCCGACGCAGGGCTCGTGAGCGGGAAAAACAACATCGTAGATAGGAGTATTCAAGACGCATATATTCACGCAATAAGACGAGCAAAAAAGTTCATATACATAGAGAACCAGTACTTTCTGGGAAGCTCTTATGCATGGAGCGCTGAAGATGGCGACATAAAACCAGAAGAAATTAACGCACTGCACGTGATACCCAAAGAACTATCACTGAAAATTGTGAGCAAGATCGAAGCAGGAGAGAGGTTCACGGTGTACGCAGTGGTGCCAATGTGGCCGGAGGGCATACCGGACAGCGGGTCGGTGCAGGCAATACTGGATTGGCAGAGAAGAACGATGGACACAATGTATAAAGACATTGTTGAAGCATTGGAGGCAAATGGTATAAGAGAAGATCCTCGCAAGTACTTAACATTCTTCTGTCTGGGAAACAGAGAAGTGAAACATGATGGCGAGTATGAACCTCCGGAACAACCAGAACCTGATTCACCATACGCGAAAGCCCAACAATCTCGTCGCTTCATGATTTACGTCCACACCAAGATGATGATAGTGGATGATGAGTACATAATCGTGGGATCTGCGAACATAAACCAGAGATCGATGGACGGAGCGAGGGACACAGAGATAGCGATGGGAGGGTATCAGCCGTATCATTTGACGACGAGCAGAGGGCCGGCGAAAGGACAGATCCATGGATTCCGAATGGCGTTGTGGTACGAGCATCTTGGGGCGATGGAGGACTGCTTCGAGAACCCAGAAAGTGAAGAGTGTGTGGAGAAGGTGAACCAGATGGCTGACAAGTACTGGGAATTGTATTCAGATGAGTCGGCGGTTGAAGAAGACCTTGCAGGTCACTTGCTGCGTTATCCTGTTAAGATTTCAAGAGAAGGACGAGTCCAGCAACTTGAAGGCTTTGAATTCTTCCCTGATACGCAGGCTCGCATTCTTGGCACCAAATCTGACTACATGCCTCCAATCCTTACCACTTAA 2439 0.4756 MAETHLHGTLHATIHEVDKLSASEDTSIFSMLKQKIEDTVGVGKGSSQVYATIDLEKARVGRTRVLENADSSLRWEESFHIYCAHVASNVIFTVKGVNKIGATLIGRAYVPVHNILAGDIHDDWLDILNEDKEPIGSKIHVKLQYFDVTKDKNWNRGIRSPKYPGVPYTFFTQRQGCKVTLYQDAHVPEDFIPRIPLSGGKYYEPHRCWEDVFEAIRNAKHLIYITGWSVYTEIKLVRDAKRPKDGGHVTLGQLLKDKASEGVRVVMLVWDDRTSVSLLKKDGLMATHDEETEIFFQDTQVHCVLCPRDPDDGAGSIIQDVQISTMFTHHQKIVVVDNELPGRGSSSKRRIVSFVGGLDLCDGRYDTAFHSLFRTLDTAHHDDFHQPNFPGADISKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWKKQGRKDVLVSHEVLEEIVIPPSPVMFPEDHETWNVQLFRSIDGGAAFGFPESPEEAADAGLVSGKNNIVDRSIQDAYIHAIRRAKKFIYIENQYFLGSSYAWSAEDGDIKPEEINALHVIPKELSLKIVSKIEAGERFTVYAVVPMWPEGIPDSGSVQAILDWQRRTMDTMYKDIVEALEANGIREDPRKYLTFFCLGNREVKHDGEYEPPEQPEPDSPYAKAQQSRRFMIYVHTKMMIVDDEYIIVGSANINQRSMDGARDTEIAMGGYQPYHLTTSRGPAKGQIHGFRMALWYEHLGAMEDCFENPESEECVEKVNQMADKYWELYSDESAVEEDLAGHLLRYPVKISREGRVQQLEGFEFFPDTQARILGTKSDYMPPILTT 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g1840 812 PIRSF PLD_plant 1 812 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Prci12g1840 812 Gene3D Endonuclease Chain A 198 444 - -
Prci12g1840 812 CDD C2_plant_PLD 2 146 - -
Prci12g1840 812 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 5 148 IPR035892 -
Prci12g1840 812 Gene3D C2 domain 5 157 IPR035892 -
Prci12g1840 812 PANTHER PHOSPHOLIPASE D 6 800 IPR015679 -
Prci12g1840 812 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 325 364 IPR001736 GO:0003824
Prci12g1840 812 SUPERFAMILY Phospholipase D/nuclease 149 436 - -
Prci12g1840 812 SUPERFAMILY Phospholipase D/nuclease 488 741 - -
Prci12g1840 812 FunFam Phospholipase D 467 702 - -
Prci12g1840 812 ProSiteProfiles C2 domain profile. 1 125 IPR000008 -
Prci12g1840 812 Gene3D Endonuclease Chain A 471 698 - -
Prci12g1840 812 Pfam C2 domain 9 126 IPR000008 -
Prci12g1840 812 FunFam Phospholipase D delta 199 444 - -
Prci12g1840 812 SMART pld_4 656 683 IPR001736 GO:0003824
Prci12g1840 812 SMART pld_4 325 364 IPR001736 GO:0003824
Prci12g1840 812 SMART C2_3c 9 124 IPR000008 -
Prci12g1840 812 Pfam Phospholipase D C terminal 729 802 IPR024632 -
Prci12g1840 812 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 656 683 IPR001736 GO:0003824
Prci12g1840 812 Pfam Phospholipase D Active site motif 325 364 IPR001736 GO:0003824
Prci12g1840 812 Pfam Phospholipase D Active site motif 657 683 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g1840 Prci-Chr12 36144023 36147511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g1840 1 812 Phospholipase D Gene Family (Wang group) AT1G52570 75.245 0.0 1284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g1840 K01115 - twl:120010960 1342.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci13g1033 13 8649404 8653545 Prci12g1840 12 36144023 36147511 CCT
Prci12g1840 12 36144023 36147511 Prci13g1033 13 8649404 8653545 ECH
Prci15g1005 15 6257423 6260953 Prci12g1840 12 36144023 36147511 ECH
Prci12g1840 12 36144023 36147511 Prci12g1840 12 36144023 36147511 ECH