Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g1820 ATGGCTTTTTGCCCAATATTTTTCTGTTCAAAGGGTCTGGGCCGAAAAGCGCGAGAGAAGAAGCTACCTAAATGGCGGGTCTTCTCTTTGAAAGAAATACTCTTGGCGACAAATAATTTTAACTATGATAACAAGCTTGAAGAAGGGGAATTTTGCAGTGTCTATTGGGGCCAACTTTGGAATGGATCACAAATTGCAGTTAAGAGATTGAAGGTTTGGAGCAACAAGGCAGGCACAGAATTTGCTTTGGAAATTGAAATATTGGCGAGTGTACGGCACAAGAATCTTGTTAGTCTGCGTGGATATTGTGCTGTGGGGCAAGAAAGGCTAATTGTATTTGACTATATGCCAAATTGGAGCCTGTTCTCTCATCTTCATGGACAGCACCCTGAAGAATGTCTTCTTGATTGGAATAGACGGATGAACATCGCGATTGGGTCAGCTGAGGGCATTGCATATCTTCACCACCAAGCAACACCACAAGTAATCCACAGAGATATCAAAGCAAGCAATGTGCTATTGGATGCAGATTTCCATGCTCGGATTACAGGTTTTGAAGTTGCCAAGTTGATTTCTGATGGGGCAACTGATGTGAGTGCCACTACAATTAAGGGAACCCTCGGCTACCTCGCACCAGAATATGCCTTGCTTGGTAAGGCATCCAAGAGTTGTGATATTTACAGTTTTGGAATTCTCTTGCTTGAACTTGCTAGTGGCAAGAGACCAATTGGAAAACTGAGTGCCACAACGAAGCAATCAATATGTGATTGGGCACTTCCTTTGGCTTGTGAGAAGAAATTTAATGAACTTGCAGATTCAAAGCTAAAGGGTAGCTATGTGGAGGAAGAACTTAAAAGAATGATTCTTGTTGGCCTTGCATGTGCTCAAAGTCAGCCTGAGAGGAGACCCACCATGCTTGAGGTGGTGGACCTTCTGAAGGGAGAATCTAAAGATAAGTTTTCTCAGCTAGAAAATAATGAACTGTTCAAAAGCCATCAAGCTTTAGAAAACAGAGATAGAGCACCAGTTTCAGAGGAGAAGGAAATACTTGATATGAAATAG 1062 0.4228 MAFCPIFFCSKGLGRKAREKKLPKWRVFSLKEILLATNNFNYDNKLEEGEFCSVYWGQLWNGSQIAVKRLKVWSNKAGTEFALEIEILASVRHKNLVSLRGYCAVGQERLIVFDYMPNWSLFSHLHGQHPEECLLDWNRRMNIAIGSAEGIAYLHHQATPQVIHRDIKASNVLLDADFHARITGFEVAKLISDGATDVSATTIKGTLGYLAPEYALLGKASKSCDIYSFGILLLELASGKRPIGKLSATTKQSICDWALPLACEKKFNELADSKLKGSYVEEELKRMILVGLACAQSQPERRPTMLEVVDLLKGESKDKFSQLENNELFKSHQALENRDRAPVSEEKEILDMK 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g1820 353 FunFam PTI1-like tyrosine-protein kinase At3g15890 116 328 - -
Prci12g1820 353 Pfam Protein kinase domain 42 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci12g1820 353 MobiDBLite consensus disorder prediction 334 353 - -
Prci12g1820 353 SMART serkin_6 40 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci12g1820 353 Gene3D Phosphorylase Kinase; domain 1 13 115 - -
Prci12g1820 353 PIRSF ILK 13 330 - -
Prci12g1820 353 FunFam PTI1-like tyrosine-protein kinase At3g15890 12 115 - -
Prci12g1820 353 Gene3D Transferase(Phosphotransferase) domain 1 116 338 - -
Prci12g1820 353 SUPERFAMILY Protein kinase-like (PK-like) 22 312 IPR011009 -
Prci12g1820 353 PANTHER OS01G0253100 PROTEIN 21 319 - -
Prci12g1820 353 ProSiteProfiles Protein kinase domain profile. 40 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci12g1820 353 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Prci12g1820 353 CDD STKc_IRAK 48 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g1820 Prci-Chr12 35995352 35998118 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g1820 7 315 Trihelix Transcription Factor Family AT1G70460 43.125 1.32e-80 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Prci12g1820 Pkinase 7.7e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g1820 - - pcin:129288687 682.559