LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci12g1819	ATGCCTTCGGTTACTCTGGAATCGAATCTAGTTCTCATGTTTCGCTCATCGTCCCTGCCATCCTTCACGTTCACGGTAAAACACGCTAGAAAAGCGCGAGAGAAGAAGCTACCTAAATGGCGGGTCTTCTCTTTGAAAGAAATACTCTTGGCGACAAATAATTTTAACTATGATAACAAGCTTGAAGAAGGGGAATTTTGCAGTGTCTATTGGGGCCAACTTTGGAATGGATCACAAATTGCAGTTAAGAGATTGAAGGTTTGGAGCAACAAGGCAGGCACAGAATTTGCTTTGGAAATTGAAATATTGGCGAGTGTACGGCACAAGAATCTTGTTAGTCTGCGTGGATATTGTGCTGTGGGGCAAGAAAGGCTAATTGTATTTGACTATATGCCAAATTGGAGCCTGTTCTCTCATCTTCATGGACAGCACCCTGAAGAATGTCTTCTTGATTGGAATAGACGGATGAACATCGCGATTGGGTCAGCTGAGGGCATTGCATATCTTCACCACCAAGCAACACCACAAGTAATCCACAGAGATATCAAAGCAAGCAATGTGCTATTGGATGCAGATTTCCATGCTCGGATTACAGGTTTTGAAGTTGCCAAGTTGATTTCTGATGGGGCAACTGATGTGAGTGCCACTACAATTAAGGGAACCCTCGGCTACCTCGCACCAGAATATGCCTTGCTTGGTAAGGCATCCAAGAGTTGTGATATTTACAGTTTTGGAATTCTCTTGCTTGAACTTGCTAGTGGCAAGAGACCAATTGGAAAACTGAGTGCCACAACGAAGCAATCAATATGTGATTGGGCACTTCCTTTGGCTTGTGAGAAGAAATTTAATGAACTTGCAGATTCAAAGCTAAAGGGTAGCTATGTGGAGGAAGAACTTAAAAGAATGATTCTTGTTGGCCTTGCATGTGCTCAAAGTCAGCCTGAGAGGAGACCCACCATGCTTGAGGTGGTGGACCTTCTGAAGGGAGAATCTAAAGATAAGTTTTCTCAGCTAGAAAATAATGAACTGTTCAAAAGCCATCAAGCTTTAGAAAACAGAGATAGAGCACCAGTTTCAGAGGAGAAGGAAATACTTGATATGAAATAG	1107	0.4264	MPSVTLESNLVLMFRSSSLPSFTFTVKHARKAREKKLPKWRVFSLKEILLATNNFNYDNKLEEGEFCSVYWGQLWNGSQIAVKRLKVWSNKAGTEFALEIEILASVRHKNLVSLRGYCAVGQERLIVFDYMPNWSLFSHLHGQHPEECLLDWNRRMNIAIGSAEGIAYLHHQATPQVIHRDIKASNVLLDADFHARITGFEVAKLISDGATDVSATTIKGTLGYLAPEYALLGKASKSCDIYSFGILLLELASGKRPIGKLSATTKQSICDWALPLACEKKFNELADSKLKGSYVEEELKRMILVGLACAQSQPERRPTMLEVVDLLKGESKDKFSQLENNELFKSHQALENRDRAPVSEEKEILDMK	368

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci12g1819	368	FunFam	PTI1-like tyrosine-protein kinase At3g15890	27	130	-	-
	Prci12g1819	368	Gene3D	Phosphorylase Kinase; domain 1	24	130	-	-
	Prci12g1819	368	Pfam	Protein kinase domain	57	324	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci12g1819	368	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	177	189	IPR008271	GO:0004672\|GO:0006468
	Prci12g1819	368	CDD	STKc_IRAK	63	329	-	-
	Prci12g1819	368	SMART	serkin_6	55	327	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci12g1819	368	PANTHER	OS01G0253100 PROTEIN	32	334	-	-
	Prci12g1819	368	Gene3D	Transferase(Phosphotransferase) domain 1	131	353	-	-
	Prci12g1819	368	FunFam	PTI1-like tyrosine-protein kinase At3g15890	131	343	-	-
	Prci12g1819	368	SUPERFAMILY	Protein kinase-like (PK-like)	38	327	IPR011009	-
	Prci12g1819	368	MobiDBLite	consensus disorder prediction	349	368	-	-
	Prci12g1819	368	ProSiteProfiles	Protein kinase domain profile.	55	336	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci12g1819	Prci-Chr12	35995352	35998128	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci12g1819	43	330	Trihelix Transcription Factor Family	AT1G70460	45.205	6.46e-80	257

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-XV	Prci12g1819		Pkinase	8.8e-40	CL0016