Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g1745 ATGCTGACGCAGCCAGTGTCGACTAGTTCGAGTACAGAGATGGCTGGACCCTCATCGGACGATGTTACTCGGCCACCGACTATGGGGGTTTCAGGCGAGCGGAGTGAATCTTCATCCTTCTCCTTCTCCTTGTCCAATTTAACTAAGGCCTATCCTTTCTCTTCTGGAAACCCTAGAATCGAAGAGACTAGAGGCGTCATGTATCTCTATCGCGAGGATGCCCCTTCCTCGTCGCCTTCTGATCTCCCTGTTGGACGGAAGCCGATTGTCTGTGTGCTTGGAGTGCCAAATCACATGACATATGCAGATTTCTGCCAGTTCTGTGGTTCATTTATTCAGCATATCTTGGAGATGCGGATTGTCAGAAATGATGGGATGGAGGATCAGTACAGTGTTTTAATTCGTTTTGATGACCAAGATTCTACAGATGGTTTCTACAAGCATTATAATAGGCGTCGTTTCTCATCTATGGAGGTGGAAGTTTGCTGTGTTTTGTTCATGTTGGATGTGCAATACACTGGCCTAATTGAACATGCACAAGCATCTAATGCTAGTTCAACTGAACAGCCTACATGTCCAGTGTGCTTAGAGAGATTGGATCAAGATACAAGTGGAATACTTACAACTATTTGCAATCATTCTTTCCATTGTTCCTGTATTTCAAAATGGGCAGATTCATCTTGTCCTGTATGCCGGTATTGTCAGCAGCAAGCTGAAAAGTCTATATGTTTTGTTTGCCAAACCACTGAGAATCTTAGCATATGTGTTATTTGTGGGTTTGTTGGCTGTGGAAAATATAAAGCAGAACATGCCAAAATACACTGGAAAGAGACACAGCATTGCTACTTCCAAGAAGTGGAAACACAGCGAGTATGGGATTATGTGAAAGACAACTATGTTCATCGGCTGATCCTGTCCAAAACTGATGGGAAGTTGGTTGAGTTAAACTCTCACTGTGAGCATACAGATCATACAGGCGATAGATGTGGAAGCTGCAGCTGTGAAGATATTGCTATGAGTGAGGCTATACTTAACAGTAAAGTTGAAGCTATTGTCAACGAGTATAATGAGTTGCTTGCTACACAACTTGAAAACCAAAAATCATACTTTGAGTCCTTACTACTAGAAGTGAAAGAAGAAACTGAGAGAGAAATCTCTAAAGCTGTCGAGAAGGCTGTTGCTCTTAAACTGCAGAAGCTGCAGTCCAAGCTTGACAGATGTTATAAAGAGAAGAAATTTTTGGATGATTTAAATGAGAATCTGCTGAAAAATCAGGTGATCTGGAAAGCGAAGATACTTGAGATTGAAGAAAGGGAGAAAAAGGCCATAAAACTCAAGGATGACAAAATAAAGACCCTGGAAGAGCAGCTAAGAGATCTCATGATTTGTCTTGAAAACGGGAAGACAGCCGAACAGCTGTCAGAGTCAGATGGAATAAAAGATGTAACTGTGGTTCCCACTTCAGTAGAATCCTCATCTACCTGTGGCTCTGAGCTGCTCAAGGAAGGTAACTAG 1515 0.4231 MLTQPVSTSSSTEMAGPSSDDVTRPPTMGVSGERSESSSFSFSLSNLTKAYPFSSGNPRIEETRGVMYLYREDAPSSSPSDLPVGRKPIVCVLGVPNHMTYADFCQFCGSFIQHILEMRIVRNDGMEDQYSVLIRFDDQDSTDGFYKHYNRRRFSSMEVEVCCVLFMLDVQYTGLIEHAQASNASSTEQPTCPVCLERLDQDTSGILTTICNHSFHCSCISKWADSSCPVCRYCQQQAEKSICFVCQTTENLSICVICGFVGCGKYKAEHAKIHWKETQHCYFQEVETQRVWDYVKDNYVHRLILSKTDGKLVELNSHCEHTDHTGDRCGSCSCEDIAMSEAILNSKVEAIVNEYNELLATQLENQKSYFESLLLEVKEETEREISKAVEKAVALKLQKLQSKLDRCYKEKKFLDDLNENLLKNQVIWKAKILEIEEREKKAIKLKDDKIKTLEEQLRDLMICLENGKTAEQLSESDGIKDVTVVPTSVESSSTCGSELLKEGN 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g1745 504 CDD RING-H2_BRAP2 190 233 IPR047243 -
Prci12g1745 504 ProSiteProfiles Zinc finger RING-type profile. 192 232 IPR001841 -
Prci12g1745 504 Coils Coil 378 417 - -
Prci12g1745 504 PANTHER BRCA1-ASSOCIATED PROTEIN 30 493 - -
Prci12g1745 504 Pfam BRCA1-associated protein 2 83 179 IPR011422 -
Prci12g1745 504 MobiDBLite consensus disorder prediction 1 39 - -
Prci12g1745 504 Pfam Ring finger domain 191 232 IPR001841 -
Prci12g1745 504 SMART Zf_UBP_1 242 291 IPR001607 GO:0008270
Prci12g1745 504 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 235 311 IPR013083 -
Prci12g1745 504 CDD RRM_BRAP2_like 90 171 - -
Prci12g1745 504 SMART ring_2 192 231 IPR001841 -
Prci12g1745 504 Pfam Zn-finger in ubiquitin-hydrolases and other protein 243 302 IPR001607 GO:0008270
Prci12g1745 504 Coils Coil 436 456 - -
Prci12g1745 504 SUPERFAMILY RING/U-box 182 233 - -
Prci12g1745 504 MobiDBLite consensus disorder prediction 1 18 - -
Prci12g1745 504 ProSiteProfiles Zinc finger UBP-type profile. 226 319 IPR001607 GO:0008270
Prci12g1745 504 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 172 234 IPR013083 -
Prci12g1745 504 SUPERFAMILY RING/U-box 208 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g1745 Prci-Chr12 35148368 35154399 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g1745 188 232 C3H Transcription Factor Family AT1G72220 48.936 2.15e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g1745 K10632 - qsu:112004506 746.888