Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g1740 ATGGATGATTCTGAAGACTTCCACGACCAAGTTTGTCACATGATGATGTCTTTTGACGAGGAAGACGAAGAGTTTCTCAGAAACATAATGCACCAGCAGCAGCAGCAGCAGCCAGCTGGTAATAATAATAACAATGATGAGAATAAGAATCAGTACTTGTGCTCTTATCTAAGCGAAGAGAAATCCTTTGCCACCGTGGATCTCTCTACTGACAGCTCCGGCAACCGTCGTGGTGGTCGTTCGAATGATAAGAAACACGTGGACGGGTCTGCTAAATCATACATTTTATCATTCGATCAGTCCAACGTAATGCCAGCAGAAGCAATCTCATCGAAACAAGAAGAATCTAGTACCTCAGAACTTTGTTCATTAAAAAGGATCAGAGCGACCACGTCGTGTAATGTTGAACCCAGAAAGAAGACTAGAAGCTGTTCGGAGACTGCAAATCATATAATGGCGGAGAGGAGGAGAAGACAGCAACTCACCGAGAGATTCATTGCACTTTCAGCAACTATTCCCGGCTTGAAGAAGATGGACAAAGCCACGATTCTTCAAGAAGCTACAAGATATGTGAAACAGCTTCAAGAACGAGTAACGGAGCTAGAGAAACAGAATAGCATCATCAACACATCAGAGTCATCAATGATATCGATCAAAAAATGTGAGCTACATAGAATTAATGATGATTTATGTGAAGCAAATGAAGTTTTGCCTCAGATTGATGCAAAAGTGTTGGAGAATCAAGTGCTATTTGGAATCTTTTGTGAGAAGCAGAAGGGCATTGAGTTTAAAATATTGACTTTGCTTGAGAATTTTCATCTTCATGTCACTAGTAGCAGCGTCTTGCCCTTTGGGAATTCCACTCTTGGCATCACCATCATTGCCCAGATGGGGGAGGAATACAGAATGACAGTGAATGAAGTGATGAAAAAGCTACGACAAGTTCTGTCAAAGTCGCACGAAGTTGATCCGTACTAG 978 0.4182 MDDSEDFHDQVCHMMMSFDEEDEEFLRNIMHQQQQQQPAGNNNNNDENKNQYLCSYLSEEKSFATVDLSTDSSGNRRGGRSNDKKHVDGSAKSYILSFDQSNVMPAEAISSKQEESSTSELCSLKRIRATTSCNVEPRKKTRSCSETANHIMAERRRRQQLTERFIALSATIPGLKKMDKATILQEATRYVKQLQERVTELEKQNSIINTSESSMISIKKCELHRINDDLCEANEVLPQIDAKVLENQVLFGIFCEKQKGIEFKILTLLENFHLHVTSSSVLPFGNSTLGITIIAQMGEEYRMTVNEVMKKLRQVLSKSHEVDPY 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g1740 325 MobiDBLite consensus disorder prediction 67 88 - -
Prci12g1740 325 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 148 210 IPR036638 GO:0046983
Prci12g1740 325 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 145 194 IPR011598 GO:0046983
Prci12g1740 325 SMART finulus 151 200 IPR011598 GO:0046983
Prci12g1740 325 Coils Coil 184 211 - -
Prci12g1740 325 PANTHER BHLH TRANSCRIPTION FACTOR 16 318 - -
Prci12g1740 325 Gene3D - 136 210 IPR036638 GO:0046983
Prci12g1740 325 Pfam Helix-loop-helix DNA-binding domain 148 195 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g1740 Prci-Chr12 35088588 35091464 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g1740 150 317 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22770 40.642 1.01e-41 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci12g1740 HLH 3.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g1740 - - pcin:129287632 619.772