Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g1739 ATGGAGGTTCCATGGCAGAATTGGTTCTCAGATCTGGATATGGATGAGACTGATTTCTTCCATCAATCTCACAAGAATAACTCTTTTGATGATGATGATGAGTTTCTTAGGGAGATCTTTCACCAACCTTCTTTCTCTTCCGAGAGTGACAGTACTCACTCTTCGTCTATTCAAAAAAACACCATCACTGCCACGTTAGATGGCGCCGCCGCAGCCACAACCCCCACTGTTAGCAGCTTATCTTTCGATAATGACTCCAGGGGGGCCGCTGGTGGTCGGCTGATGAAGCCTGACAGCTCGAATTCGATCCTCTCGAAACTTGTATTACCGGCCACGTCCGATGATGGTTACCGGAAACAAGAATCGGCGATGAAGAGTGCTAATAATCAAGAGAAATTAGAGAGTAACAGTGCTGGTGGAGGAGAAGGAGGAGGAGGAGGCACACATGGCCCGCATAAACGAACTCTAGAAAACCGTAATAGTGAGCCAAAAGCTAGTCATGGGACGACAAAGAAGACTAGAAGTTCATCTGAGACACTGGATCACATCATGGCCGAGAGAAAAAGAAGACAAGAACTCACTGAGAAATTTATTGCACTCTCAGCTACAATTCCTGGTCTCAAGAAGATAGACAAGGCATCGATACTAAGCGAAGCGATAATTCACGTGAAGCAACTTCAAGAGAGAGTGAAAGAGTTAGAGGAACAGAACAAGAAGATGAGTGTGGAGACAGTGTCATACATGCTGATGATGAAGAAGAAGTCATCATCGTCAAGCCAGCTTTATAGCAACAACCACAATAATAATGAAGAGATTCAAGACACGACGTCGTGTGAAATGAGCTCTGATTATTACTTCAGAATGAACGAAGCACTTCCTGAAGTGGAAGCAAGAGTTTTACAAAAGGAAGTTCTCATCAGAATCCACTGTGAAAATCAAAATGGCGTTGTTCTTAACGTGTTGGCCCAGCTCCACACTCTTCATTTCTCCATAATCAGTCATAGTGTCTTGCCTTTTGGAAATTCTGCTCTCGATATCACCATTATTGCTGAGGTTGACGAGGAACACAGCATACCAGTGAAGGAACTCGTGAAAAAGCTGAGAACGACTCTGTTGAAGTCAGTTGATTGA 1131 0.4403 MEVPWQNWFSDLDMDETDFFHQSHKNNSFDDDDEFLREIFHQPSFSSESDSTHSSSIQKNTITATLDGAAAATTPTVSSLSFDNDSRGAAGGRLMKPDSSNSILSKLVLPATSDDGYRKQESAMKSANNQEKLESNSAGGGEGGGGGTHGPHKRTLENRNSEPKASHGTTKKTRSSSETLDHIMAERKRRQELTEKFIALSATIPGLKKIDKASILSEAIIHVKQLQERVKELEEQNKKMSVETVSYMLMMKKKSSSSSQLYSNNHNNNEEIQDTTSCEMSSDYYFRMNEALPEVEARVLQKEVLIRIHCENQNGVVLNVLAQLHTLHFSIISHSVLPFGNSALDITIIAEVDEEHSIPVKELVKKLRTTLLKSVD 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g1739 376 PANTHER BHLH TRANSCRIPTION FACTOR 26 373 - -
Prci12g1739 376 MobiDBLite consensus disorder prediction 121 180 - -
Prci12g1739 376 Gene3D - 173 254 IPR036638 GO:0046983
Prci12g1739 376 MobiDBLite consensus disorder prediction 122 136 - -
Prci12g1739 376 SMART finulus 183 232 IPR011598 GO:0046983
Prci12g1739 376 Pfam Helix-loop-helix DNA-binding domain 182 227 IPR011598 GO:0046983
Prci12g1739 376 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 177 226 IPR011598 GO:0046983
Prci12g1739 376 MobiDBLite consensus disorder prediction 152 180 - -
Prci12g1739 376 Coils Coil 216 243 - -
Prci12g1739 376 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 180 248 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g1739 Prci-Chr12 35069442 35072401 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g1739 151 371 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 41.892 2.33e-42 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci12g1739 HLH 3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g1739 - - pcin:129289587 657.521