Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g1738 ATGGAGGTTCCATGGCAGAATTGGTTCTCAGATCTGGATATGGATGAGACTGATTTCTTCCATCAATCTCACAAGAATAACTCTTTTGATGATGATGATGAGTTTCTTAGGGAGATCTTTCACCAACCTTCTTTCTCTTCCGAGAGTGACAGTACTCACTCTTCGTCTATTCAAAAAAACACCATCACTGCCACGTTAGATGGCGCCGCCGCAGCCACAACCCCCACTGTTAGCAGCTTATCTTTCGATAATGACTCCAGGGGGGCCGCTGGTGGTCGGCTGATGAAGCCTGACAGCTCGAATTCGATCCTCTCGAAACTTGGTAGCTTCTCGGACAAACCTGTAACCTCGTTGTCCTCGTCAACTTATATTCTGTCTTTTGATAACTCAACAGTATTACCGGCCACGTCCGATGATGGTTACCGGAAACAAGAATCGGCGATGAAGAGTGCTAATAATCAAGAGAAATTAGAGAGTAACAGTGCTGGTGGAGGAGAAGGAGGAGGAGGAGGCACACATGGCCCGCATAAACGAACTCTAGAAAACCGTAATAGTGAGCCAAAAGCTAGTCATGGGACGACAAAGAAGACTAGAAGTTCATCTGAGACACTGGATCACATCATGGCCGAGAGAAAAAGAAGACAAGAACTCACTGAGAAATTTATTGCACTCTCAGCTACAATTCCTGGTCTCAAGAAGATAGACAAGGCATCGATACTAAGCGAAGCGATAATTCACGTGAAGCAACTTCAAGAGAGAGTGAAAGAGTTAGAGGAACAGAACAAGAAGATGAGTGTGGAGACAGTGTCATACATGCTGATGATGAAGAAGAAGTCATCATCGTCAAGCCAGCTTTATAGCAACAACCACAATAATAATGAAGAGATTCAAGACACGACGTCGTGTGAAATGAGCTCTGATTATTACTTCAGAATGAACGAAGCACTTCCTGAAGTGGAAGCAAGAGTTTTACAAAAGGAAGTTCTCATCAGAATCCACTGTGAAAATCAAAATGGCGTTGTTCTTAACGTGTTGGCCCAGCTCCACACTCTTCATTTCTCCATAATCAGTCATAGTGTCTTGCCTTTTGGAAATTCTGCTCTCGATATCACCATTATTGCTGAGGTTGACGAGGAACACAGCATACCAGTGAAGGAACTCGTGAAAAAGCTGAGAACGACTCTGTTGAAGTCAGTTGATTGA 1203 0.4389 MEVPWQNWFSDLDMDETDFFHQSHKNNSFDDDDEFLREIFHQPSFSSESDSTHSSSIQKNTITATLDGAAAATTPTVSSLSFDNDSRGAAGGRLMKPDSSNSILSKLGSFSDKPVTSLSSSTYILSFDNSTVLPATSDDGYRKQESAMKSANNQEKLESNSAGGGEGGGGGTHGPHKRTLENRNSEPKASHGTTKKTRSSSETLDHIMAERKRRQELTEKFIALSATIPGLKKIDKASILSEAIIHVKQLQERVKELEEQNKKMSVETVSYMLMMKKKSSSSSQLYSNNHNNNEEIQDTTSCEMSSDYYFRMNEALPEVEARVLQKEVLIRIHCENQNGVVLNVLAQLHTLHFSIISHSVLPFGNSALDITIIAEVDEEHSIPVKELVKKLRTTLLKSVD 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g1738 400 MobiDBLite consensus disorder prediction 146 160 - -
Prci12g1738 400 SMART finulus 207 256 IPR011598 GO:0046983
Prci12g1738 400 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 204 272 IPR036638 GO:0046983
Prci12g1738 400 Gene3D - 199 277 IPR036638 GO:0046983
Prci12g1738 400 MobiDBLite consensus disorder prediction 176 204 - -
Prci12g1738 400 MobiDBLite consensus disorder prediction 137 204 - -
Prci12g1738 400 Coils Coil 240 267 - -
Prci12g1738 400 Pfam Helix-loop-helix DNA-binding domain 206 251 IPR011598 GO:0046983
Prci12g1738 400 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 201 250 IPR011598 GO:0046983
Prci12g1738 400 PANTHER BHLH TRANSCRIPTION FACTOR 39 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g1738 Prci-Chr12 35069442 35072401 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g1738 175 395 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 41.892 2.72e-42 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci12g1738 HLH 3.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g1738 - - pcin:129289587 716.457