Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g1722 ATGACGACGTGGCAGAATTGTTTCTCCGATCTGGATGTGGAGAAGACCGATTCTTTCAATGAACTATTCAGCATAAATAACTCTACAATTGATCCTGAGGATTATGACTTCCTTAAGGACTTCATTCACCAACCTCCTCACTTCTCTTCCATGAGTCACACTACTCATCAGTCTCCCCTTCTCGAAAGCATCGCCGCCGTCAGTAACGACTCCTCCGCCAGCCAACCGAAGCATAACAGCCCGAGTTCGATCATCTCAGGACTCAGTACTATCTCCGACAAACCGCCGCCTGAGAAACATGAACCTGAGAACAAGCGTGCTTCGCTGAAACGGACTCCGCCAGAAAGCCGTAACAGTGACCCAAAGGCCAATCAAAGGACGAGGAAGACGAGAAGTTTATCCGAGTCGCTGGATCATATAATGTCTGAGAGAAAAAGAAGACAAGAACTCACTGAGAAGTTCATTGCTCTTTCTGCTACAATTCCTGGTCTCAAGAAGATTGACAAGTCGTCAGTATTGAGCGAAGCGATCAACTACGTGAAGAAACTTCAAGAACGAGTGAGAGAGTTAGAGAAACAGAAGAAGAAGATGAGCACCGAGTTACCATCATTGTCAAGCATGAAGAAATTACATCACCATCATCATCAAGACACAACATCATCTTCTGAAACAATGACACTGGGCTCTGAATCTGATCATGATGATGATGATGATGATGATGAGTGCTTCAGAATGAACGAAGCATTGCCTGAAGTTGAAGCGAGAGTTTCACAGAAGGAGATTCTGATCAGGATCCACTGTGCGAAGCAAAACATTGTGATGCTTAATATATTGGCCGAACTCAAAAGCCTCCATTTCTCCATCATCAGTACCAGCGTCTTAACATTTGCAAATTCTGCTCTTGACATTACCATCATTGCTGAGGTCGAGGAACATAAAATAACGTTGAAGGAGCTTGTTGAAAAGCTTCGATTGGCTCTGTTGAAGACATCTGGCAACCAACAGTGA 1008 0.4425 MTTWQNCFSDLDVEKTDSFNELFSINNSTIDPEDYDFLKDFIHQPPHFSSMSHTTHQSPLLESIAAVSNDSSASQPKHNSPSSIISGLSTISDKPPPEKHEPENKRASLKRTPPESRNSDPKANQRTRKTRSLSESLDHIMSERKRRQELTEKFIALSATIPGLKKIDKSSVLSEAINYVKKLQERVRELEKQKKKMSTELPSLSSMKKLHHHHHQDTTSSSETMTLGSESDHDDDDDDDECFRMNEALPEVEARVSQKEILIRIHCAKQNIVMLNILAELKSLHFSIISTSVLTFANSALDITIIAEVEEHKITLKELVEKLRLALLKTSGNQQ 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g1722 335 SMART finulus 140 189 IPR011598 GO:0046983
Prci12g1722 335 Coils Coil 173 200 - -
Prci12g1722 335 MobiDBLite consensus disorder prediction 94 139 - -
Prci12g1722 335 Coils Coil 306 326 - -
Prci12g1722 335 MobiDBLite consensus disorder prediction 68 139 - -
Prci12g1722 335 PANTHER BHLH TRANSCRIPTION FACTOR 44 330 - -
Prci12g1722 335 MobiDBLite consensus disorder prediction 68 90 - -
Prci12g1722 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 134 183 IPR011598 GO:0046983
Prci12g1722 335 Gene3D - 128 210 IPR036638 GO:0046983
Prci12g1722 335 MobiDBLite consensus disorder prediction 192 242 - -
Prci12g1722 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 139 207 IPR036638 GO:0046983
Prci12g1722 335 Pfam Helix-loop-helix DNA-binding domain 139 184 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g1722 Prci-Chr12 34956485 34961249 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g1722 97 327 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 40.948 7.14e-39 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci12g1722 HLH 1.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g1722 - - pcin:129289282 603.594