Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g1716 ATGGATGGTTGCAAAAAATCCTCCATATCGGGCCAGTCATACAGTTCTCTCTATGTCAATCCTCTCACTGAGCTCAGACTCAGCCGTAGTTGCAGCTGCGATCATGGCCGTTTAGCTGCTAAAGGTGACGACTTCGAAGATTTCGATCACAGAGGCACCAAAATCTTGACAGATAACAAAGAGAATACGATGCCTAACAAGAAAGAAATTGTAGTTTCTTCTGGTGATGACAAGGAGAACGCAGAGCCCAAAACGTACTCCAATTCTAAGTCTTTGTCCGCTGATAGGATCTTGAAGCCTACTTCGCTTCAGTTCTGCATGCAAGTAAGTGATTCTGAAAAGGCTTTTGGGTCTAAGATATGGGATCGTTTTGATTCGGAGAATTCGAGGTCTCTGAATGTTTGGGACTTCTCTGATTCTGAGGCGGCTCCAGCTTCATCGTGGTCCACTCTGCCAAACAAGTCTTTGATATGCAGACCTTTGCCTGTTGATATAGGAAGATGTACCTGTGTTATTGTAAAGGAAGCATCACCAGAAGGACTATCTGGGGGCATACTGTTTTCTCTTTATACCTATGAAGGTAAGGGACGACAGAATAGGAAACTGGCTGTGGCTTACCACAAGAGGCGAAATGGGAGGTCTCAGTTCACCATAGCTCAGAATGTGAAAGGACTTTTGTCCAATTCAGATGATAGTTTTCTTGGAACAGTGATGGCAAACTTCATGGGTTCAAAATACCACATATGGGATCAGGGATATCGTCAAAATTGCGGAGTTAAACAACCAAAACCACCACTTTCTGTTGTGGCATTCATGCCTACCATAGCAACATGTGCAGGAAGTTACAGAAGCATGAGGGTATATGTACCCAAACATCAATCTATGTCACTGAAGAACACAAGTCAGGTACAACATATCAAAGGACTGCCAAAAGATTGGGAGGAAAATCTGGACAAAGTCCATCAGCTATTCTCAAGAATGCCAATTTACAACAAGATTTCAAAGCAGTTTGAACTGGACTTCAGAGATAAAGGAAGATCAGGACTTCAGATCCAAGCATCAGTAAAAAATTTCCAGCTGACATTGGAGGAGAATGGGAGGCAAACAATTCTGCAACTAGGCAGGGTGGAAAAATCCAAGTTTGTTTTGGATTACAGATATCCTTTGACAGGTTACCAAGCATTCTGCATATGCTTGGCTTCCATTGATACAAAGCTTTGCTGCACAGTGTAG 1233 0.4282 MDGCKKSSISGQSYSSLYVNPLTELRLSRSCSCDHGRLAAKGDDFEDFDHRGTKILTDNKENTMPNKKEIVVSSGDDKENAEPKTYSNSKSLSADRILKPTSLQFCMQVSDSEKAFGSKIWDRFDSENSRSLNVWDFSDSEAAPASSWSTLPNKSLICRPLPVDIGRCTCVIVKEASPEGLSGGILFSLYTYEGKGRQNRKLAVAYHKRRNGRSQFTIAQNVKGLLSNSDDSFLGTVMANFMGSKYHIWDQGYRQNCGVKQPKPPLSVVAFMPTIATCAGSYRSMRVYVPKHQSMSLKNTSQVQHIKGLPKDWEENLDKVHQLFSRMPIYNKISKQFELDFRDKGRSGLQIQASVKNFQLTLEENGRQTILQLGRVEKSKFVLDYRYPLTGYQAFCICLASIDTKLCCTV 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g1716 410 Pfam Tub family 159 404 IPR000007 -
Prci12g1716 410 PANTHER TUBBY-RELATED 65 407 - -
Prci12g1716 410 SUPERFAMILY Tubby C-terminal domain-like 145 409 IPR025659 -
Prci12g1716 410 MobiDBLite consensus disorder prediction 57 87 - -
Prci12g1716 410 Gene3D Tubby Protein; Chain A 153 403 IPR025659 -
Prci12g1716 410 PRINTS Tubby superfamily signature 233 257 IPR000007 -
Prci12g1716 410 PRINTS Tubby superfamily signature 346 362 IPR000007 -
Prci12g1716 410 PRINTS Tubby superfamily signature 366 385 IPR000007 -
Prci12g1716 410 PRINTS Tubby superfamily signature 387 409 IPR000007 -
Prci12g1716 410 MobiDBLite consensus disorder prediction 57 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g1716 Prci-Chr12 34873594 34878718 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g1716 55 303 TUB Transcription Factor Family AT1G16070 51.246 6.52e-91 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Prci12g1716 Tub 2.1e-41 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g1716 K19600 - cave:132188154 561.992