LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci12g1682	ATGTTCAACTCTTGTTACAATTCATATGGCCAGAGAGATACATTTGTAAGGTTGGATGATCTTGATTCTAACAATTCAGTGCAATCCAGCCCACGAGGAATCATGAAGAAGCTCAGATTTAATATAGAGGGTAAGCCACTTCCTGGTCGTGAAAATAAGAATGCATCAAAATCCTTTAGGATAGGAATGAAGAGAGGATCAGATGGACTAAAGACATTTGGAAGATCACTGAAAAGTGGAGTCACCTGGCAAGTGTTCCCAGAAGATCTTAAAGTATCAGAGACTAAAATATTTGATCCTCAAGACAAGACCCTTTTGCTGTGGAACAAGTTTTTTGAGCTTCTGTGTATTATTTCAGTGTCATGTGATCCTCTCTTCTTCTACCTTCCCTACTTCAACCTCAGATCACACTGCCTCGCCATTGATACTGCACTTGCATCTACTGCTATTATTCTGAGATCAATACTTGACGCTATCTATCTCATCCGCGTGGCTTTCCAATTCCGGACTGCTTATATTGCACCATCCTCTCGGGTGTTTGGACGAGGTGAACTTGTCATTGATCCTAAAAAGATTGCCAAGAGATACCTAGGGCGTTACTTCATCATTGATTTCAGTTCTGTGCTGCCATTGCCACAGATTGTGGTGGCCAACTATCTTCGCAAAGCAAAAGGTTTAGAGGTGTTGGCCACAAAAACTACGCTACTGAGAGTGGTCATCCTCCAATACATTCCGAGATTTGCACGCTTTATCCCTTTAGCTACGGAAGTTAAGAAGACAGCTGCTGTTTTTTCTGATAATGCGCTTGTGGGTGCCACCTACTATTTGGTTTGGTACATGCTTGTTAGTCATATAGTGGGGTCTGCATGGTACTTACTAGCCATTGAACGAAATGACACATGCTGGCAGAAGGCTTGTGCTGCTGCTTCCGCTCAAGGATGCATTCCACATTTCTTGTACTGTGAGAGCTCGAATAGGCGCCATCCTGGATATGAAGCCTGGAAAAATGTCAACGGGGATATTCTTGACAGGAATTGTGGGGCTGGAGGTGACGACCCTCCATTTGACTATGGCATCTACGCTAGAGTTATAGAGAAGGGTATTACTGCCTCCAGTGATATGTGGAGTAAATTCTTTTTATGTTTCTGGTGGGGCCTTCAAAATGTCAGCACACTTGGGCAAGGGCTTGACACTAGTACTTACATTGGGGAGGCTTTGTTCTCCATATTTATATGTATTTTGGGGCTTGTGCTCATGGCTCTTCTGATTGGAAAAGTGCAGAACTACCTTCAATCAATCACCGTCCGCCTTGAGGAAATGAGGATCAAAAGGCGTGATTCTGAGCAGTGGATGCATCACCGTGTGCTTCCACAAGAGCTAAGGGAAAGAGTGAGACGCTATGATCAATACAAATGGATGGAAACTCGAGGAGTGGATGAAGAGACCTTGGTGCAGAGTCTTCCAAAAGATCTAAGGAGGGATATCAAACGGCATCTTTGCTTGAATTTGGTTAGAAGGGTTCCTCTCTTTGCTAATATGGACGAACGCTTGCTTGATGCTATTTGTGAGCGTTTGAAGCCTAGTTTGTACACAGAGGGAACGTACATTGTCAGGGAAGGAGATCCGGTAGTTGAGATGTTCTTCATCATACGTGGTCGTTTAGAGAGTGTGACCACAGATGGTGGACGAAGTGGATTTTTCAACAGAGGTCTTCTCAAAGAAGGTGATTTTTGTGGAGAAGAGCTTCTGACATGGGCACTGGACCCGAAATCTGCAGCTAACTTGCCATCATCTACACGGACAGTGAAAGCTATCAATGAGGTGGAGGCATTTGCTTTGGAAGCAGAGATGTTGAAGTTTGTGGCTTCACAGTTCAGACGCCTCCATAGCAGACAAGTTCAGCAGACCTTCCGTTTCTACTCGCAGCAATGGAGAACATGGGCAGCAACTTTCATTCAGGCTGCGTGGCGCCGATATACCAAGAGGAAGATGATAGAGTCACAACTAATAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGATTATGGTTCTGATGATGATGGAACAGCCTTGATTTCACGTACTGAAAGTTCATCAAGGACTGGACTTGGCTCAGCCATCTATGCTTCCCGCTTTGCTGCTAAAGCCCTTCATGGTCATAAGCTTCGTTCTCTCCGAAAGCCCCCAGAACCTGACTTCAGTGTTTATGATCATAGCGATTGA	2223	0.4476	MFNSCYNSYGQRDTFVRLDDLDSNNSVQSSPRGIMKKLRFNIEGKPLPGRENKNASKSFRIGMKRGSDGLKTFGRSLKSGVTWQVFPEDLKVSETKIFDPQDKTLLLWNKFFELLCIISVSCDPLFFYLPYFNLRSHCLAIDTALASTAIILRSILDAIYLIRVAFQFRTAYIAPSSRVFGRGELVIDPKKIAKRYLGRYFIIDFSSVLPLPQIVVANYLRKAKGLEVLATKTTLLRVVILQYIPRFARFIPLATEVKKTAAVFSDNALVGATYYLVWYMLVSHIVGSAWYLLAIERNDTCWQKACAAASAQGCIPHFLYCESSNRRHPGYEAWKNVNGDILDRNCGAGGDDPPFDYGIYARVIEKGITASSDMWSKFFLCFWWGLQNVSTLGQGLDTSTYIGEALFSIFICILGLVLMALLIGKVQNYLQSITVRLEEMRIKRRDSEQWMHHRVLPQELRERVRRYDQYKWMETRGVDEETLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTEGTYIVREGDPVVEMFFIIRGRLESVTTDGGRSGFFNRGLLKEGDFCGEELLTWALDPKSAANLPSSTRTVKAINEVEAFALEAEMLKFVASQFRRLHSRQVQQTFRFYSQQWRTWAATFIQAAWRRYTKRKMIESQLIEEEEEEEEEEDYGSDDDGTALISRTESSSRTGLGSAIYASRFAAKALHGHKLRSLRKPPEPDFSVYDHSD	740

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci12g1682	740	SUPERFAMILY	cAMP-binding domain-like	439	629	IPR018490	-
	Prci12g1682	740	FunFam	Cyclic nucleotide-gated ion channel 1	436	500	-	-
	Prci12g1682	740	Gene3D	Jelly Rolls	507	627	IPR014710	-
	Prci12g1682	740	Pfam	Ion transport protein	107	436	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085
	Prci12g1682	740	ProSiteProfiles	cAMP/cGMP binding motif profile.	509	592	IPR000595	-
	Prci12g1682	740	MobiDBLite	consensus disorder prediction	670	701	-	-
	Prci12g1682	740	FunFam	Cyclic nucleotide-gated ion channel 1	507	625	-	-
	Prci12g1682	740	SMART	cnmp_10	509	640	IPR000595	-
	Prci12g1682	740	MobiDBLite	consensus disorder prediction	670	686	-	-
	Prci12g1682	740	SUPERFAMILY	Voltage-gated potassium channels	100	431	-	-
	Prci12g1682	740	Gene3D	-	114	435	-	-
	Prci12g1682	740	Gene3D	Helix hairpin bin	437	500	-	-
	Prci12g1682	740	Pfam	Cyclic nucleotide-binding domain	530	618	IPR000595	-
	Prci12g1682	740	ProSiteProfiles	IQ motif profile.	645	674	IPR000048	GO:0005515
	Prci12g1682	740	CDD	CAP_ED	509	640	IPR000595	-
	Prci12g1682	740	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED	88	733	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci12g1682	Prci-Chr12	34524932	34529196	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci12g1682	1	733	Ion Channels	AT1G15990	66.263	0.0	958

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci12g1682	K05391		-	gmx:100810453	1058.9