Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g1653 ATGAGCAGGATGACATTAAAATCATCATTCTCGTATTTAAATTCAAATCCTAGTCTTGTTATCTCTTTCCCAAAACCACCCAGACCCAGTTTCTATCAAGAGCTTAAATTTCTTTCTTGCAAAATCCTACAAGGTTTGTTCCTTCCTTTATCAGCCATGTCGGATGGATGCAAAAAATCCTCCATTTTAGGTCAGTCATACAATTCTCTCTACGTCAATCCCCTCACTGAATTCCGGCACAGTCGCAGTTGCAGTGATAGTGTCCGCTTAGCCTCCAAATGCGACAAATGTGAAGATTTCACGCACCGAAAAGTTGCAACTGATAATAAAGAGAATGTCACGCCCAAGAGGAAAGATGCAACTCTGTTTTGTGACAAGGAAAATGCAGTGCCTACGAATGGGCCTTCTTCTTTGCCCAAACATTTCTCAAAGTCCAAGTCTTTGTGCACAGATAGGATTTTGAAGCCGAACTCGCTTCAGTTTTGTATGCAGATGAACGAACCTGAAAAGGCTTTTGGGTCCAAGATATGGGATAATGTGCATTTTGAAAATATGAGCTCTTTAAAGATTTGGGATTACTCTGATTCAGAGGCAGCCCCAGCTTCTTCCTGGTCAACGTTGCCCAATAAGTCTTTGATCTGTAGATCGTTGCCTATAGATATTGGAAGGTGTACGTGTCTTATTGTAAAGGAAGCAAAACCAGAAGGACTATCCGGGGGCACTATGTTTTCGCTTTATACTTATGAAGGTCAAGGTCGCCAGAATAGGAAACTCGCTGTCGCTTATCACAAGAGGCGGAATGGGAGATCTCAGTTCATTGTGGCTCACAATGTAAAAGGTCTCTTGTCCAATTCAGATGATAGTTTCCTTGGAACAGTAACAGCAAACCTCCTGGGTTCAAAATACCGTATTTGGGATCAGGGATTTCATCATAATTTGCATGATAAACAGTCAAAACCACCTCTTGCCGTTGTGATGTTTATACCTACAGCAGCAACATGTACAGGAAGTTACAGAAGTATGAGGGCATATGTACCCAAGCATCAATCTATGTCACTAAAGAGCACAGCTCAGGTTCAACATATCAAAGGACTACCCATGGATTGGGAGGGAAAGTTAGACAAAGTCCATCAATTGTTCTCAAGGGTTCCACTTTACAACAAAACTTCAAAACAATTTGAACTTGACTTTAAAGATAAAGGAAGAGCAGGACTTAGAATCCAAAGATCGGTAAAAAATTTCCAGCTGACTTTGGAGAATGGGAAGCAAACTATTCTTCAACTGGGTAGAGTTGAGAAATCAAAATTTGTTATGGATTACAGATATCCTTTGACAGGTTACCAAGCGTTCTGCTTAAGTTTAGCTTCCATTGATACCAAGCTCTGTTGCTCTGTGTAG 1398 0.4084 MSRMTLKSSFSYLNSNPSLVISFPKPPRPSFYQELKFLSCKILQGLFLPLSAMSDGCKKSSILGQSYNSLYVNPLTEFRHSRSCSDSVRLASKCDKCEDFTHRKVATDNKENVTPKRKDATLFCDKENAVPTNGPSSLPKHFSKSKSLCTDRILKPNSLQFCMQMNEPEKAFGSKIWDNVHFENMSSLKIWDYSDSEAAPASSWSTLPNKSLICRSLPIDIGRCTCLIVKEAKPEGLSGGTMFSLYTYEGQGRQNRKLAVAYHKRRNGRSQFIVAHNVKGLLSNSDDSFLGTVTANLLGSKYRIWDQGFHHNLHDKQSKPPLAVVMFIPTAATCTGSYRSMRAYVPKHQSMSLKSTAQVQHIKGLPMDWEGKLDKVHQLFSRVPLYNKTSKQFELDFKDKGRAGLRIQRSVKNFQLTLENGKQTILQLGRVEKSKFVMDYRYPLTGYQAFCLSLASIDTKLCCSV 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g1653 465 PRINTS Tubby superfamily signature 289 313 IPR000007 -
Prci12g1653 465 PRINTS Tubby superfamily signature 442 464 IPR000007 -
Prci12g1653 465 PRINTS Tubby superfamily signature 402 418 IPR000007 -
Prci12g1653 465 PRINTS Tubby superfamily signature 421 440 IPR000007 -
Prci12g1653 465 SUPERFAMILY Tubby C-terminal domain-like 201 463 IPR025659 -
Prci12g1653 465 Gene3D Tubby Protein; Chain A 206 464 IPR025659 -
Prci12g1653 465 PANTHER TUBBY-RELATED 117 462 - -
Prci12g1653 465 Pfam Tub family 218 459 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g1653 Prci-Chr12 34283441 34286674 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g1653 108 359 TUB Transcription Factor Family AT1G16070 54.615 6.98e-91 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Prci12g1653 Tub 1.4e-37 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g1653 K19600 - qsa:O6P43_017913 577.4