Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g1652 ATGAGCAGGATGACATTAAAATCATCATTCTCGTATTTAAATTCAAATCCTAGTCTTGTTATCTCTTTCCCAAAACCACCCAGACCCAGTTTCTATCAAGAGCTTAAATTTCTTTCTTGCAAAATCCTACAAGGTTTGTTCCTTCCTTTATCAGCCATGTCGGATGGATGCAAAAAATCCTCCATTTTAGGTCAGTCATACAATTCTCTCTACGTCAATCCCCTCACTGAATTCCGGCACAGTCGCAGTTGCAGTGATAGTGTCCGCTTAGCCTCCAAATGCGACAAATGTGAAGATTTCACGCACCGAAAAGTTGCAACTGATAATAAAGAGAATGTCACGCCCAAGAGGAAAGATGCAACTCTGTTTTGTGACAAGGAAAATGCAGTGCCTACGAATGGGCCTTCTTCTTTGCCCAAACATTTCTCAAAGTCCAAGTCTTTGTGCACAGATAGGATTTTGAAGCCGAACTCGCTTCAGTTTTGTATGCAGATGAACGAACCTGAAAAGGCTTTTGGGTCCAAGATATGGGATAATGTGCATTTTGAAAATATGAGCTCTTTAAAGATTTGGGATTACTCTGATTCAGAGGCAGCCCCAGCTTCTTCCTGGTCAACGTTGCCCAATAAGTCTTTGATCTGTAGATCGTTGCCTATAGATATTGGAAGGTGTACGTGTCTTATTGTAAAGGAAGCAAAACCAGAAGGACTATCCGGGGGCACTATGTTTTCGCTTTATACTTATGAAGGTCAAGGTCGCCAGAATAGGAAACTCGCTGTCGCTTATCACAAGAGGCGGAATGGGAGATCTCAGTTCATTGTGGCTCACAATGTAAAAGGTCTCTTGTCCAATTCAGATGATAGTTTCCTTGGAACAGTAACAGCAAACCTCCTGGGTTCAAAATACCGTATTTGGGATCAGGGATTTCATCATAATTTGCATGATAAACAGTCAAAACCACCTCTTGCCGTTGTGATGTTTATACCTACAGCAGCAACATGTACAGGAAGTTACAGAAGTATGAGGGCATATGTACCCAAGCATCAATCTATGTCACTAAAGAGCACAGCTCAGGTTCAACATATCAAAGGACTACCCATGGATTGGGAGGGAAAGTTAGACAAAGTCCATCAATTGTTCTCAAGGGTTCCACTTTACAACAAAACTTCAAAACAATTTGAACTTGACTTTAAAGATAAAGGAAGAGCAGGACTTAGAATCCAAAGATCGGTAAAAAATTTCCAGCTGACTTTGGAGGAGAATGGGAAGCAAACTATTCTTCAACTGGGTAGAGTTGAGAAATCAAAATTTGTTATGGATTACAGATATCCTTTGACAGGTTACCAAGCGTTCTGCTTAAGTTTAGCTTCCATTGATACCAAGCTCTGTTGCTCTGTGTAG 1401 0.409 MSRMTLKSSFSYLNSNPSLVISFPKPPRPSFYQELKFLSCKILQGLFLPLSAMSDGCKKSSILGQSYNSLYVNPLTEFRHSRSCSDSVRLASKCDKCEDFTHRKVATDNKENVTPKRKDATLFCDKENAVPTNGPSSLPKHFSKSKSLCTDRILKPNSLQFCMQMNEPEKAFGSKIWDNVHFENMSSLKIWDYSDSEAAPASSWSTLPNKSLICRSLPIDIGRCTCLIVKEAKPEGLSGGTMFSLYTYEGQGRQNRKLAVAYHKRRNGRSQFIVAHNVKGLLSNSDDSFLGTVTANLLGSKYRIWDQGFHHNLHDKQSKPPLAVVMFIPTAATCTGSYRSMRAYVPKHQSMSLKSTAQVQHIKGLPMDWEGKLDKVHQLFSRVPLYNKTSKQFELDFKDKGRAGLRIQRSVKNFQLTLEENGKQTILQLGRVEKSKFVMDYRYPLTGYQAFCLSLASIDTKLCCSV 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g1652 466 PANTHER TUBBY-RELATED 117 463 - -
Prci12g1652 466 PRINTS Tubby superfamily signature 289 313 IPR000007 -
Prci12g1652 466 PRINTS Tubby superfamily signature 443 465 IPR000007 -
Prci12g1652 466 PRINTS Tubby superfamily signature 402 418 IPR000007 -
Prci12g1652 466 PRINTS Tubby superfamily signature 422 441 IPR000007 -
Prci12g1652 466 Pfam Tub family 218 460 IPR000007 -
Prci12g1652 466 Gene3D Tubby Protein; Chain A 206 465 IPR025659 -
Prci12g1652 466 SUPERFAMILY Tubby C-terminal domain-like 201 464 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g1652 Prci-Chr12 34283441 34286674 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g1652 108 359 TUB Transcription Factor Family AT1G16070 54.615 6.67e-91 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Prci12g1652 Tub 3.4e-38 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g1652 K19600 - qsa:O6P43_017913 582.793