Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g1648 ATGAAGCTAACGGTGAAGACTTTGAAAGGAAGGAATTTTGAAATCAGGGTCCATCCCTCCGACACTGTCATGGCAGTTAAGAAGAACATTGAAGATGTACAAGGAAAAGATAATTATCCATGTGGACAGCAATTGCTGATTCACAATGGCAAGGTGTTGAAAGATGAGTCTACAGTAGCAGAGAACAATGTCTCTGAAGATGGATTTATTGTTGTAATGCTTGGCAAGAATAAAACCTTCAGTTCAGCTGGGGCTTCATCCACTCAGCCTGCTAGTAATACAACTGCAACTGTGTCTGCGTCAAATTCCACTCCAGTACCCAATCCACCAGAACAAACTCAGGCTGCAAACAACAGAACCTCAGCAGCACATGCCACGTTAACAAATGTACCTACAGATACTTATGGTGAGGCTGCTTCAAATTTAGTTGCTGGTACTAATCTTGAACAGACTATTCAACAAATTATGGACATGGGTGGTGGCAACTGGGACAGAGAGACAGTTAGTCGTGCTCTTCGGGCAGCTTTTAGTAACCCAGAGCGTGCTGGAATTCCTGAGGCAACAGCAGTTGCTGAACCAGTTGCTCAGTTTCCAGCGACTCAAACAACCGAAGCGAGTGAGGCTACTGCCAGAGCTGTTCCTGGAGCACCGAACTCATCTCCCTTAAACATGTTTCCTCAGGAGGCACTTGGAGCTGACGCTGGACTCGGATCTCTTGACTTCCTTAGAGACAATCCCCAGTTTCAAGCATTGCGGTCGATGGTGCATTCCAATCCGCAAATACTACAGCCTGTGCTTCAGGAGCTAGGAAAGCAGAATCCCAATCTTTTAAGAATGATTGAACAACATAATGCTGAGTTTCTCCAATTAATTAACGAACCAGTTGAAGGTTCTGAAGGGGACATCTTTGACCAGCCTGAGCTAGACATGCCTCATTCCATCAATGTGACGCCAGCTGAGCAGGAAGCAATTGGAAGGCTTGAGGCTATGGGATTTGATAGAGCCTCAGTTATAGAAGCATTTTTGGCATGTGACCGGGATGAACAGTTGGCAGCCAACTATTTGTTGGAGAATGCTGGAGATTTTGACGATTGA 1095 0.4539 MKLTVKTLKGRNFEIRVHPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTVAENNVSEDGFIVVMLGKNKTFSSAGASSTQPASNTTATVSASNSTPVPNPPEQTQAANNRTSAAHATLTNVPTDTYGEAASNLVAGTNLEQTIQQIMDMGGGNWDRETVSRALRAAFSNPERAGIPEATAVAEPVAQFPATQTTEASEATARAVPGAPNSSPLNMFPQEALGADAGLGSLDFLRDNPQFQALRSMVHSNPQILQPVLQELGKQNPNLLRMIEQHNAEFLQLINEPVEGSEGDIFDQPELDMPHSINVTPAEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFDD 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g1648 364 Coils Coil 266 286 - -
Prci12g1648 364 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Prci12g1648 364 Pfam UBA/TS-N domain 148 182 IPR015940 -
Prci12g1648 364 Pfam UBA/TS-N domain 320 355 IPR015940 -
Prci12g1648 364 SUPERFAMILY XPC-binding domain 236 302 IPR036353 GO:0003684|GO:0006289|GO:0043161
Prci12g1648 364 Pfam XPC-binding domain 239 294 IPR015360 GO:0003684|GO:0006289|GO:0043161
Prci12g1648 364 SUPERFAMILY Ubiquitin-like 1 85 IPR029071 -
Prci12g1648 364 SMART CBM 234 280 IPR006636 -
Prci12g1648 364 NCBIfam UV excision repair protein Rad23 1 363 IPR004806 GO:0006289
Prci12g1648 364 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 353 - -
Prci12g1648 364 SMART uba_6 148 192 IPR015940 -
Prci12g1648 364 SMART uba_6 320 357 IPR015940 -
Prci12g1648 364 FunFam UV excision repair protein RAD23 1 80 - -
Prci12g1648 364 FunFam UV excision repair protein RAD23 homolog 311 359 - -
Prci12g1648 364 CDD Ubl_Rad23 1 74 - -
Prci12g1648 364 PRINTS DNA repair protein Rad23 signature 331 345 IPR004806 GO:0006289
Prci12g1648 364 PRINTS DNA repair protein Rad23 signature 346 361 IPR004806 GO:0006289
Prci12g1648 364 PRINTS DNA repair protein Rad23 signature 314 330 IPR004806 GO:0006289
Prci12g1648 364 PRINTS DNA repair protein Rad23 signature 265 287 IPR004806 GO:0006289
Prci12g1648 364 Gene3D - 311 359 - -
Prci12g1648 364 SUPERFAMILY UBA-like 299 362 IPR009060 GO:0005515
Prci12g1648 364 FunFam UV excision repair protein RAD23 homolog 141 182 - -
Prci12g1648 364 SUPERFAMILY UBA-like 131 182 IPR009060 GO:0005515
Prci12g1648 364 Gene3D - 141 183 - -
Prci12g1648 364 Gene3D - 1 80 - -
Prci12g1648 364 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Prci12g1648 364 MobiDBLite consensus disorder prediction 81 120 - -
Prci12g1648 364 Gene3D - 230 295 IPR036353 GO:0003684|GO:0006289|GO:0043161
Prci12g1648 364 FunFam UV excision repair protein RAD23 B 230 295 - -
Prci12g1648 364 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 318 358 IPR015940 -
Prci12g1648 364 SMART ubq_7 1 75 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g1648 Prci-Chr12 34253624 34260337 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g1648 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 37.838 6.73e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g1648 K10839 - gmx:100778187 557.37