Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g1632 ATGGCTCAAGACTCTGCCTCTGATCTTCTCTGCTTGGATGATTCTCTCCTCTCAGCTCTGTTTCACGAGGATGAAGACGAGGATCACGCCCCTTTTACCGATGATAAATTAGCCCAACGCTTGCAGTTTCAGGAAACCCTCTACTCCTCCTTGATCACTTCCCAAAACCCACAAAATAATCCGTCGTCGTCGTCATCTTCTTCTTCTTCTTTGCTCATTTTACCTTTATCTGCATCATCGTCTTCTCCTTTGAAAATGGCTGACACTTGCCCTACCCCACAAGTCGAGCAAGTGAAATCCTCAAATGAAGCGTGTGAATCGTCGCAAGTCATCTGTGAGATCTGTGCAGAAACTAAAGAGACTTCCCAGATGTTCAGAAATCAGAGATGCCACCACTCGTTTTGCTCTGATTGTGTTACAAAACAAGTGGCCACAAAAATTCAGGACAACATAGCAGTAGTTTCGTGTCCTGGTTTGGATTGTAAAAGTGATCTTGAGCTTGATGCTTGTCGGCCATGGCTTCCCAAGGACTTGCTTGACAGGTGGGATCAGGCTTTGTGTGAAGGTCTGTTTCTGGCAGCCCCTAAATATTACTGTCCCTTTAAGGATTGTTCAGCTATGTTGCTAATTGAGAATGGGGAAGAAGATCAACAAGCTATAAGGGAAGCGGAGTGCCCTGTTTGCCACAGACTGTTCTGTGCAAGATGTAATGTGGCATGGCATCCTGGAGTTGAATGTGAGGAATTTCAGAATATGAATGAGAATGAGAGAGTTAGGGAAGATCTGATTGTGAGAGAGATTGCTAAAGAGAAGAAATGGAGAAGGTGTCCCCAGTGTAGGTTCTTTGTGGAAAAGATTGATGGATGCGTGCACATCACTTGCAGGTGCCACTATGAGTTTTGCTATGCGTGTGGAGAACAATGGACTTCTTCTCACGGAGGCTGCCAAACAAATTAG 957 0.4504 MAQDSASDLLCLDDSLLSALFHEDEDEDHAPFTDDKLAQRLQFQETLYSSLITSQNPQNNPSSSSSSSSSLLILPLSASSSSPLKMADTCPTPQVEQVKSSNEACESSQVICEICAETKETSQMFRNQRCHHSFCSDCVTKQVATKIQDNIAVVSCPGLDCKSDLELDACRPWLPKDLLDRWDQALCEGLFLAAPKYYCPFKDCSAMLLIENGEEDQQAIREAECPVCHRLFCARCNVAWHPGVECEEFQNMNENERVREDLIVREIAKEKKWRRCPQCRFFVEKIDGCVHITCRCHYEFCYACGEQWTSSHGGCQTN 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g1632 318 CDD BRcat_RBR_unk 193 249 - -
Prci12g1632 318 SUPERFAMILY RING/U-box 191 251 - -
Prci12g1632 318 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 190 IPR013083 -
Prci12g1632 318 ProSitePatterns Zinc finger RING-type signature. 130 139 IPR017907 -
Prci12g1632 318 SUPERFAMILY RING/U-box 256 316 - -
Prci12g1632 318 ProSiteProfiles Zinc finger RING-type profile. 112 157 IPR001841 -
Prci12g1632 318 FunFam RBR-type E3 ubiquitin transferase 248 318 - -
Prci12g1632 318 SUPERFAMILY RING/U-box 107 189 - -
Prci12g1632 318 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 55 308 IPR031127 GO:0004842|GO:0016567
Prci12g1632 318 SMART ibrneu5 180 246 IPR002867 GO:0008270
Prci12g1632 318 SMART ibrneu5 256 315 IPR002867 GO:0008270
Prci12g1632 318 FunFam RBR-type E3 ubiquitin transferase 107 193 - -
Prci12g1632 318 Gene3D - 242 318 - -
Prci12g1632 318 CDD Rcat_RBR_unk 272 308 - -
Prci12g1632 318 ProSiteProfiles TRIAD supradomain profile. 108 318 IPR044066 -
Prci12g1632 318 Pfam IBR domain, a half RING-finger domain 264 315 IPR002867 GO:0008270
Prci12g1632 318 Pfam IBR domain, a half RING-finger domain 197 246 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g1632 Prci-Chr12 34161441 34162942 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g1632 112 305 C3H Transcription Factor Family AT2G19610 30.693 7.61e-23 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g1632 K11975 - qsa:O6P43_027978 369.777