Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g1629 ATGAAGTGGACTGATAGGGTAAGGACCATCAAGAGGGGGCAGCACCAAGAGCAAATTAGGCACCCCTCCTTCTTGGCTTTGTTGCTTCGAAAGCACGCATTTCTACCTCTATATACAATCAGTAAATTTCGGAAGTTCATCATCCGGCATGAAAACCTTCCCTCGTCACCGTCACCGTCACCGTCACCATCACCATCGTCATCGTCATCGTCATCGTCATCGTCATCGTCATCATCTTCTTCTTCTTGGCCTAATCAAGTAACAGAACATGTGAGATCTTCTAACAGAACAGTTGAATCCTTGCAAGTCATATGTGAAATCTGCGCAGAAATTAAACGAACAACCCAGATGATCAGGAGCCCAACATGCCACCATTCGTTCTGCTCTGATTGTGTAACAAAACATGTGGCCACAAAAATCCAAGACAGCATAACAGCAGTTTCGTGTCCTGGTTTGGATTGTAAGAGTGTTTTTGAGATGGAAGCTTGTCGGCCATGGCTTCCCAAGGACTTGCTTGAAAGGTGGGATCAGGCTCTGTGTGAAGCTCTGTTTCTGCAACTCCCAACAATTTATTGCCCCTTTAAGGATTGTTCAGTTATGTTGCTGGTTGAGAATGAGGAAGATCAACAAGCTGCAAGGGAAACAGAGTGCCCTGTTTGCCACAGATTGTTCTGTCCAAGATGTAATGTACCATGGCATCATGGAGTCGATTGTGAGGAATACCAGAAACTGAATGAGAATGAGAGAGGAAGTGAAGATTTGCTTGTGAGACAGCTTGCTAAAGAGAAGAAATGGAGGAGATGTCCTAAGTGTAAGTTCTATGTGGAGAAGACAACTGGATGCTTGCATATCACTTGCAGGTGCAAATATCAGTTTTGTTATGCATGTGGAGAAGAATGGACAACTCATCGAGCCTGCCAAGGAAATTAG 930 0.4452 MKWTDRVRTIKRGQHQEQIRHPSFLALLLRKHAFLPLYTISKFRKFIIRHENLPSSPSPSPSPSPSSSSSSSSSSSSSSSSSWPNQVTEHVRSSNRTVESLQVICEICAEIKRTTQMIRSPTCHHSFCSDCVTKHVATKIQDSITAVSCPGLDCKSVFEMEACRPWLPKDLLERWDQALCEALFLQLPTIYCPFKDCSVMLLVENEEDQQAARETECPVCHRLFCPRCNVPWHHGVDCEEYQKLNENERGSEDLLVRQLAKEKKWRRCPKCKFYVEKTTGCLHITCRCKYQFCYACGEEWTTHRACQGN 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g1629 309 MobiDBLite consensus disorder prediction 65 91 - -
Prci12g1629 309 Pfam IBR domain, a half RING-finger domain 176 238 IPR002867 GO:0008270
Prci12g1629 309 Pfam IBR domain, a half RING-finger domain 256 306 IPR002867 GO:0008270
Prci12g1629 309 SUPERFAMILY RING/U-box 249 305 - -
Prci12g1629 309 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 47 303 IPR031127 GO:0004842|GO:0016567
Prci12g1629 309 Gene3D - 235 309 - -
Prci12g1629 309 CDD BRcat_RBR_unk 190 241 - -
Prci12g1629 309 ProSiteProfiles Zinc finger RING-type profile. 105 150 IPR001841 -
Prci12g1629 309 ProSiteProfiles TRIAD supradomain profile. 101 309 IPR044066 -
Prci12g1629 309 FunFam RBR-type E3 ubiquitin transferase 100 186 - -
Prci12g1629 309 MobiDBLite consensus disorder prediction 53 91 - -
Prci12g1629 309 SUPERFAMILY RING/U-box 103 182 - -
Prci12g1629 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 183 IPR013083 -
Prci12g1629 309 Pfam Zinc finger, C3HC4 type (RING finger) 105 150 IPR018957 GO:0046872
Prci12g1629 309 SUPERFAMILY RING/U-box 178 243 - -
Prci12g1629 309 FunFam RBR-type E3 ubiquitin transferase 240 309 - -
Prci12g1629 309 SMART ibrneu5 173 238 IPR002867 GO:0008270
Prci12g1629 309 SMART ibrneu5 248 306 IPR002867 GO:0008270
Prci12g1629 309 CDD Rcat_RBR_unk 264 300 - -
Prci12g1629 309 ProSitePatterns Zinc finger RING-type signature. 123 132 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g1629 Prci-Chr12 34154859 34158195 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g1629 105 297 C3H Transcription Factor Family AT2G19610 29.064 9.72e-21 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g1629 K11975 - qsa:O6P43_027978 332.798