Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g1628 ATGAAGTGGACTGATAGGGTAAGGACCATCAAGAGGGGGCAGCACCAAGAGCAAATTAGGCACCCCTCCTTCTTGGCTTTGTTGCTTCGAAAGCACGCATTTCTACCTCTATATACAATCAGTAAAGTAGGGCTGAACACTACGTTGTCTTCTTCACTCCTTTATGACCTTACTGTACACTCCATGGCCCAAGATTCTTTCTCCGATCTTCTCTACGAATTGTTCTTCTTGTCTTCTTTCTTCTCTTTTGTTGCCACTGAACTTCTCTGCGTTGAATACCCATCTTTCTCTGCTCTGTTTTTCCAACATGAACATGATCAACATGTCCCATTGACTGATGATCATTGTCATCCACGCTCGCAGTTTCGGAAGTTCATCATCCGGCATGAAAACCTTCCCTCGTCACCGTCACCGTCACCGTCACCATCACCATCGTCATCGTCATCGTCATCGTCATCGTCATCGTCATCATCTTCTTCTTCTTGGCCTAATCAAGTAACAGAACATGTGAGATCTTCTAACAGAACAGTTGAATCCTTGCAAGTCATATGTGAAATCTGCGCAGAAATTAAACGAACAACCCAGATGATCAGGAGCCCAACATGCCACCATTCGTTCTGCTCTGATTGTGTAACAAAACATGTGGCCACAAAAATCCAAGACAGCATAACAGCAGTTTCGTGTCCTGGTTTGGATTGTAAGAGTGTTTTTGAGATGGAAGCTTGTCGGCCATGGCTTCCCAAGGACTTGCTTGAAAGGTGGGATCAGGCTCTGTGTGAAGCTCTGTTTCTGCAACTCCCAACAATTTATTGCCCCTTTAAGGATTGTTCAGTTATGTTGCTGGTTGAGAATGAGGAAGATCAACAAGCTGCAAGGGAAACAGAGTGCCCTGTTTGCCACAGATTGTTCTGTCCAAGATGTAATGTACCATGGCATCATGGAGTCGATTGTGAGGAATACCAGAAACTGAATGAGAATGAGAGAGGAAGTGAAGATTTGCTTGTGAGACAGCTTGCTAAAGAGAAGAAATGGAGGAGATGTCCTAAGTGTAAGTTCTATGTGGAGAAGACAACTGGATGCTTGCATATCACTTGCAGGTGCAAATATCAGTTTTGTTATGCATGTGGAGAAGAATGGACAACTCATCGAGCCTGCCAAGGAAATTAG 1167 0.4422 MKWTDRVRTIKRGQHQEQIRHPSFLALLLRKHAFLPLYTISKVGLNTTLSSSLLYDLTVHSMAQDSFSDLLYELFFLSSFFSFVATELLCVEYPSFSALFFQHEHDQHVPLTDDHCHPRSQFRKFIIRHENLPSSPSPSPSPSPSSSSSSSSSSSSSSSSSWPNQVTEHVRSSNRTVESLQVICEICAEIKRTTQMIRSPTCHHSFCSDCVTKHVATKIQDSITAVSCPGLDCKSVFEMEACRPWLPKDLLERWDQALCEALFLQLPTIYCPFKDCSVMLLVENEEDQQAARETECPVCHRLFCPRCNVPWHHGVDCEEYQKLNENERGSEDLLVRQLAKEKKWRRCPKCKFYVEKTTGCLHITCRCKYQFCYACGEEWTTHRACQGN 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g1628 388 Pfam Zinc finger, C3HC4 type (RING finger) 184 229 IPR018957 GO:0046872
Prci12g1628 388 SUPERFAMILY RING/U-box 257 322 - -
Prci12g1628 388 MobiDBLite consensus disorder prediction 132 170 - -
Prci12g1628 388 SUPERFAMILY RING/U-box 182 261 - -
Prci12g1628 388 CDD BRcat_RBR_unk 269 320 - -
Prci12g1628 388 FunFam RBR-type E3 ubiquitin transferase 179 265 - -
Prci12g1628 388 SMART ibrneu5 252 317 IPR002867 GO:0008270
Prci12g1628 388 SMART ibrneu5 327 385 IPR002867 GO:0008270
Prci12g1628 388 CDD Rcat_RBR_unk 343 379 - -
Prci12g1628 388 MobiDBLite consensus disorder prediction 144 170 - -
Prci12g1628 388 FunFam RBR-type E3 ubiquitin transferase 319 388 - -
Prci12g1628 388 Gene3D - 314 388 - -
Prci12g1628 388 ProSiteProfiles TRIAD supradomain profile. 180 388 IPR044066 -
Prci12g1628 388 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 114 382 IPR031127 GO:0004842|GO:0016567
Prci12g1628 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 178 262 IPR013083 -
Prci12g1628 388 ProSitePatterns Zinc finger RING-type signature. 202 211 IPR017907 -
Prci12g1628 388 Pfam IBR domain, a half RING-finger domain 335 385 IPR002867 GO:0008270
Prci12g1628 388 Pfam IBR domain, a half RING-finger domain 255 317 IPR002867 GO:0008270
Prci12g1628 388 SUPERFAMILY RING/U-box 328 384 - -
Prci12g1628 388 ProSiteProfiles Zinc finger RING-type profile. 184 229 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g1628 Prci-Chr12 34154859 34158195 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g1628 184 376 C3H Transcription Factor Family AT2G19610 29.064 1.12e-20 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g1628 K11975 - qsa:O6P43_027978 333.569