Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g1627 ATGGCTCAAGACTCTTTCTTTGATCTTCTCTACGAATTGTTCTTCTTGTTTTCTTTCTTCTTCACTTTTGTTGCCACTGAACTTCTCTGCGTTGAATACCCATCTTTCTCTGCTCTGTTTTTCCAACATGAACATGATCAACATGTCCCATTCACTGATGATCGTTATCCTCCGCGCTCGCAGTACCAGAAGTTCATCATTCCTCATGAAAACCTCCCATCGTCATCATCACCATCATCATCGTCATCTTCTTCTTCTTCTTGGCCAAACCAAGTAACAGAGCATGTGAAATCTTCAAATAGAGCAGTTGAATCCTTGCAAGTCATTTGTGAAATCTGCACAGAAATTAAACGAACTACCGAGATGATCAAGAGCCAAACATGCCACCATTCGTTTTGCTCTGATTGTGTGACAAAACATGTGGCCACAAAAATCCAAGACAGCATAACATCAGTTTCGTGTCCTGGTTTGGATTGTAAGAGTGTTTTTGAGATGGAAGCTTGTCGGCCATGGCTTCCCAAGGACTTGCTTGAAAGGTGGGATCAGGCTCTGTGTGAAGCTCTGTTTCTGCAACTCCCAACAATTTATTGCCCCTTTAAGGATTGTTCAGTTATGTTGCTGGTTGAGAATGAGGAAGATCAACAAGCTGCAAAGGAAACAGATTGCCCTGTTTGCCACAGATTGTTCTGTCCAAGATGTAATGTACCATGGCATCATGGAGTCGATTGTGAGGAATACCAGAAACTGAATGAGAATGAGAGAGGAAGTGAAGATTTGCTTGTGAGACAGCTTGCTAAAGAGAATCAATGGAGAAGGTGTCCTAAGTGTAAGTTCTATGTGGAGAAGACAACTGGATGCTTGCATATCACTTGCAGGTGCAAATATGAGTTTTGTTATGCATGTGGAGAAGAATGGACAAACACTCATGGAGGCTGCCAAGGAAAGTAG 948 0.423 MAQDSFFDLLYELFFLFSFFFTFVATELLCVEYPSFSALFFQHEHDQHVPFTDDRYPPRSQYQKFIIPHENLPSSSSPSSSSSSSSSWPNQVTEHVKSSNRAVESLQVICEICTEIKRTTEMIKSQTCHHSFCSDCVTKHVATKIQDSITSVSCPGLDCKSVFEMEACRPWLPKDLLERWDQALCEALFLQLPTIYCPFKDCSVMLLVENEEDQQAAKETDCPVCHRLFCPRCNVPWHHGVDCEEYQKLNENERGSEDLLVRQLAKENQWRRCPKCKFYVEKTTGCLHITCRCKYEFCYACGEEWTNTHGGCQGK 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g1627 315 CDD Rcat_RBR_unk 269 305 - -
Prci12g1627 315 MobiDBLite consensus disorder prediction 71 91 - -
Prci12g1627 315 ProSiteProfiles Zinc finger RING-type profile. 110 155 IPR001841 -
Prci12g1627 315 ProSitePatterns Zinc finger RING-type signature. 128 137 IPR017907 -
Prci12g1627 315 SUPERFAMILY RING/U-box 254 312 - -
Prci12g1627 315 SUPERFAMILY RING/U-box 108 187 - -
Prci12g1627 315 Pfam Zinc finger, C3HC4 type (RING finger) 110 155 IPR018957 GO:0046872
Prci12g1627 315 CDD BRcat_RBR_unk 195 246 - -
Prci12g1627 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 188 IPR013083 -
Prci12g1627 315 ProSiteProfiles TRIAD supradomain profile. 106 315 IPR044066 -
Prci12g1627 315 FunFam RBR-type E3 ubiquitin transferase 105 191 - -
Prci12g1627 315 FunFam RBR-type E3 ubiquitin transferase 245 315 - -
Prci12g1627 315 SMART ibrneu5 253 312 IPR002867 GO:0008270
Prci12g1627 315 SMART ibrneu5 178 243 IPR002867 GO:0008270
Prci12g1627 315 SUPERFAMILY RING/U-box 183 248 - -
Prci12g1627 315 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 74 305 IPR031127 GO:0004842|GO:0016567
Prci12g1627 315 Gene3D - 240 314 - -
Prci12g1627 315 Pfam IBR domain, a half RING-finger domain 181 243 IPR002867 GO:0008270
Prci12g1627 315 Pfam IBR domain, a half RING-finger domain 261 312 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g1627 Prci-Chr12 34143371 34145161 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g1627 110 302 C3H Transcription Factor Family AT2G19610 28.218 1.31e-21 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g1627 K11975 - qsa:O6P43_027978 343.584