Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Prci12g1625 | ATGCTGTATTTGATTGAGTACCAGAAGTTCATCATTCCTCATGAAAACCTCCCATCGTCATCATCACCATCATCATCGTCATCTTCTTCTTCTTCTTGGCCAAACCAAGTAACAGAGCATGTGAAATCTTCAAATAGAGCAGTTGAATCCTTGCAAGTCATTTGTGAAATCTGCACAGAAATTAAACGAACTACCGAGATGATCAAGAGCCAAACATGCCACCATTCGTTTTGCTCTGATTGTGTGACAAAACATGTGGCCACAAAAATCCAAGACAGCATAACATCAGTTTCGTGTCCTGGTTTGGATTGTAAGAGTGTTTTTGAGATGGAAGCTTGTCGGCCATGGCTTCCCAAGGACTTGCTTGAAAGGTGGGATCAGGCTCTGTGTGAAGCTCTGTTTCTGCAACTCCCAACAATTTATTGCCCCTTTAAGGATTGTTCAGTTATGTTGCTGGTTGAGAATGAGGAAGATCAACAAGCTGCAAAGGAAACAGATTGCCCTGTTTGCCACAGATTGTTCTGTCCAAGATGTAATGTACCATGGCATCATGGAGTCGATTGTGAGGAATACCAGAAACTGAATGAGAATGAGAGAGGAAGTGAAGATTTGCTTGTGAGACAGCTTGCTAAAGAGAATCAATGGAGAAGGTGTCCTAAGTGTAAGTTCTATGTGGAGAAGACAACTGGATGCTTGCATATCACTTGCAGGTGCAAATATGAGTTTTGTTATGCATGTGGAGAAGAATGGACAAACACTCATGGAGGCTGCCAAGGAAAGTAG | 783 | 0.4227 | MLYLIEYQKFIIPHENLPSSSSPSSSSSSSSSWPNQVTEHVKSSNRAVESLQVICEICTEIKRTTEMIKSQTCHHSFCSDCVTKHVATKIQDSITSVSCPGLDCKSVFEMEACRPWLPKDLLERWDQALCEALFLQLPTIYCPFKDCSVMLLVENEEDQQAAKETDCPVCHRLFCPRCNVPWHHGVDCEEYQKLNENERGSEDLLVRQLAKENQWRRCPKCKFYVEKTTGCLHITCRCKYEFCYACGEEWTNTHGGCQGK | 260 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Prci12g1625 | 260 | ProSiteProfiles | TRIAD supradomain profile. | 51 | 260 | IPR044066 | - | |
| Prci12g1625 | 260 | FunFam | RBR-type E3 ubiquitin transferase | 190 | 260 | - | - | |
| Prci12g1625 | 260 | Pfam | IBR domain, a half RING-finger domain | 206 | 257 | IPR002867 | GO:0008270 | |
| Prci12g1625 | 260 | Pfam | IBR domain, a half RING-finger domain | 126 | 188 | IPR002867 | GO:0008270 | |
| Prci12g1625 | 260 | ProSiteProfiles | Zinc finger RING-type profile. | 55 | 100 | IPR001841 | - | |
| Prci12g1625 | 260 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 24 | 250 | IPR031127 | GO:0004842|GO:0016567 | |
| Prci12g1625 | 260 | MobiDBLite | consensus disorder prediction | 17 | 36 | - | - | |
| Prci12g1625 | 260 | FunFam | RBR-type E3 ubiquitin transferase | 50 | 136 | - | - | |
| Prci12g1625 | 260 | ProSitePatterns | Zinc finger RING-type signature. | 73 | 82 | IPR017907 | - | |
| Prci12g1625 | 260 | SUPERFAMILY | RING/U-box | 53 | 132 | - | - | |
| Prci12g1625 | 260 | Gene3D | - | 185 | 259 | - | - | |
| Prci12g1625 | 260 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 49 | 133 | IPR013083 | - | |
| Prci12g1625 | 260 | Pfam | Zinc finger, C3HC4 type (RING finger) | 55 | 100 | IPR018957 | GO:0046872 | |
| Prci12g1625 | 260 | CDD | Rcat_RBR_unk | 214 | 250 | - | - | |
| Prci12g1625 | 260 | CDD | BRcat_RBR_unk | 140 | 191 | - | - | |
| Prci12g1625 | 260 | SUPERFAMILY | RING/U-box | 199 | 257 | - | - | |
| Prci12g1625 | 260 | SUPERFAMILY | RING/U-box | 128 | 193 | - | - | |
| Prci12g1625 | 260 | SMART | ibrneu5 | 198 | 257 | IPR002867 | GO:0008270 | |
| Prci12g1625 | 260 | SMART | ibrneu5 | 123 | 188 | IPR002867 | GO:0008270 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Prci12g1625 | Prci-Chr12 | 34141634 | 34145161 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Prci12g1625 | 55 | 247 | C3H Transcription Factor Family | AT2G19610 | 28.218 | 4.82e-22 | 92.4 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Prci12g1625 | K11975 | - | qsa:O6P43_027978 | 334.724 |