Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g1623 ATGGCTGCCACAGAGACCACCAAGCCCCAGAACGAATTCATCTTCAGGTCCAAACTTCCCGATATCTACATCCCCAAACACCTTCCTCTTCATTCCTATTGCTTCGAGAATCTCGCCGAATTCGGGTCCCATCCTTGCCTGATCAATGCCCCCACCGGCGACATCTACACCTACTCCGACGTCGAGCTCACCGCCCGCCGAGTTGCCTCCGGATTGAACAAATTCGGCGTCGGTCAGGGCGATGTCATCATGGTCCTCCTCTCCAATTCCCCTGAATTCGTCTTCTCCTTCCTCGGCGCCTCATTCCGCGGCGCCATGACGACCGCCGCGAATCCCTTCTTCACGCCGGCGGAGATTGCCAAACAAGCCAAAGCCTCCAATGCCAAGATCCTCATCACTCAATCATCCTACTACGAGAAAGTGAAGGACCTGGACATGAAGCTCATCTTCGTCGATTCTCCTCCCGACGGACACTCGCATTTCTCAGAGCTATCTCAGGCGGACGAGAACGATGTTCCCGAGGTGGAAATCAAACCAGACGACGTCGTCGCATTGCCGTATTCCTCTGGCACCACCGGGTTACCGAAGGGAGTGATGCTCACGCATAAGGGATTGGTGACGAGTATAGCCCAACAAGTGGACGGAGAGAATCCGAACCTATACTTCCACCATGAAGATGTGATTCTGTGCGTGCTTCCCCTGTTTCACATCTACTCGCTGAACTCTGTTTTGCTGTGTGGATTGAGGGCGAAGGCGGCGATCATGTTGATGCCCAAGTTTGAAATCAATGGGTTGTTGAGGTTGATAGAGAAATACAAGGTGTCCATCGCTCCGGTGGTGCCGCCGATCGTGCTGGCCATCTCAAAGTCCCCGGATATCGATAATTACAACCTGTCATCGATCAGAGTATTGAAGTCCGGTGGTGCTCCTCTCGGTAAAGAACTTGAAGACTCTCTGAGGTCCAAGTTCCCTAAGGCCAGACTCGGTCAGGGTTATGGGATGACGGAGGCAGGTCCAGTGTTGACGATGAGCTTAGCATTTGCGAAGGAAGCGATGGAGGTGAAGGCAGGAGCGTGTGGGACGGTAGTGAGGAATGCAGAGATGAAGATTGTAGATCCTGAGACCTCTGAATCTTTGCCACGTAACCACCCCGGCGAGATCTGCATCAGAGGCGATCAAATTATGAAAGGGTATCTGAATGATCCTGAGGCAACGAAGGGAACGATAGACGCGGAGGGGTGGTTGCATACGGGAGACATAGGCTACATCGATGACGACGATGAGCTGTTCATCGTTGATAGGCTGAAGGAGCTGATCAAGTACAAGGGCTTTCAGGTGGCCCCCGCAGAACTGGAGGCCCTCCTTCTCTCTCATCCTCACATCTCCGACGCCGCCGTGGTCCCAATGAAGGATGAAGCAGCTGGAGAGGTGCCCGTTGCTTTTGTGGTCAGATCTAACGGTCACACTCAAACCACTGAGAATGACATCAAGCAGTTCATCTCAGAACAGGTGGTGTTTTACAAGAGACTAAGCAGAGTGTTCTTCATAGATGCGATTCCAAAGTCACCATCAGGCAAGATCCTAAGAAAGGACCTCAGAGCCAAACTAGCTTCTGCTAACTGA 1623 0.525 MAATETTKPQNEFIFRSKLPDIYIPKHLPLHSYCFENLAEFGSHPCLINAPTGDIYTYSDVELTARRVASGLNKFGVGQGDVIMVLLSNSPEFVFSFLGASFRGAMTTAANPFFTPAEIAKQAKASNAKILITQSSYYEKVKDLDMKLIFVDSPPDGHSHFSELSQADENDVPEVEIKPDDVVALPYSSGTTGLPKGVMLTHKGLVTSIAQQVDGENPNLYFHHEDVILCVLPLFHIYSLNSVLLCGLRAKAAIMLMPKFEINGLLRLIEKYKVSIAPVVPPIVLAISKSPDIDNYNLSSIRVLKSGGAPLGKELEDSLRSKFPKARLGQGYGMTEAGPVLTMSLAFAKEAMEVKAGACGTVVRNAEMKIVDPETSESLPRNHPGEICIRGDQIMKGYLNDPEATKGTIDAEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLLSHPHISDAAVVPMKDEAAGEVPVAFVVRSNGHTQTTENDIKQFISEQVVFYKRLSRVFFIDAIPKSPSGKILRKDLRAKLASAN 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g1623 540 FunFam 4-coumarate--CoA ligase 2 437 539 - -
Prci12g1623 540 SUPERFAMILY Acetyl-CoA synthetase-like 13 538 - -
Prci12g1623 540 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 10 534 - -
Prci12g1623 540 CDD 4CL 24 532 - -
Prci12g1623 540 Pfam AMP-binding enzyme C-terminal domain 450 526 IPR025110 -
Prci12g1623 540 Gene3D - 436 538 IPR045851 -
Prci12g1623 540 ProSitePatterns Putative AMP-binding domain signature. 185 196 IPR020845 -
Prci12g1623 540 Gene3D - 8 435 IPR042099 -
Prci12g1623 540 FunFam Long-chain-fatty-acid--CoA ligase FadD 16 436 - -
Prci12g1623 540 Pfam AMP-binding enzyme 37 441 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g1623 Prci-Chr12 34112379 34117259 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g1623 5 504 Monolignol Biosynthesis Gene Families AT1G51680 68.555 0.0 707
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g1623 K01904 - qsa:O6P43_027979 895.19