Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g1620 ATGGGTTCTGCAGAGGATAAAATAGACCTTGACTCGGATGAGGAGATTGCTTTTAGACCTTCACCATCTACAACAAAAGTCCATACTTTTGATTTTGAGACAGCAAATGTACTTTCTCCTGTAAATTTGGCCAGCTCATCCTTCTTTAAGCGGACACAGATCCGGCCTATCAGGAGCATGTATAATGTCTTAATTAAAGCAAAGATCAACATGTTGCTACCTTTTGGTCCCTTGGCGATATTGCTACATTATGTGACACAAAAGCATGGATGGGTGTTCTTTTTCAGCTTACTGGGTATTACTCCTTTGGCAGAACGCTTGGGTTATGCTACAGAGCAGCTTGCATTGTATACTGGACCAACAGTCGGAGGTCTTCTGAATGCCACATTTGGTAATGCCACTGAAATGATTATATCAATTTATGCTTTGAAAAATGGGATGATTAGAGTCGTTCAGCAGTCTCTATTGGGCTCAATTTTATCAAACATGCTTCTCGTTCTTGGATGTGCGTTCTTTACTGGAGGGATTGTCCACCAAAATAAGGTTCAGGTTTTCAACAAGGCATCTGCTGTTGTAAATTCAGGGCTGCTCTTGATGGCTGTGATGGGAATATTATTTCCTGCTGTGCTTCACTTTACGCACTCAGAGGTTCATTTTGGAAAATCAGAGCTATTGTTATCCAGATTTAGTAGCTGTATAATGCTAGTGGCATATGCAAGCTACCTTTTCTTTCAATTAAGAAGTCAGCATAATCTTTATAGCCCTATTGAAGAGGAAGATGGCAATAGTGAAAATGACGATGAGGAAGAAATTGAATTAACTAAATGGGAAGCAATAGGCTGGCTTGCTATTTTGACTGTATGGGTATCTGTATTGTCTGGATACCTTGTGGATGCTATAGAGGGGGCATCTGAGTCATTGCATATGCCTGTGGCTTTTATTAGTGTCATATTGCTTCCAATTGTAGGCAATGCTGCTGAGCATGCAAGCGCCATCATGTTTGCCATGAAGGATAAGCTTGATATCACACTTGGAGTTGCTATTGGATCTTCTACACAGATATCTATGTTTGTGATCCCTTTCTGTGTTGTTATTGGGTGGTGCATGGGAAAAGAAATGGACTTGAATTTTCAACTCTTCGAGACCGCCACACTTTTTATCACAGTGCTAGTAGTTGCATTTATGTTGCAGGGTAATTCCAGCTCGAAAGACTTACTCCAGTAA 1224 0.406 MGSAEDKIDLDSDEEIAFRPSPSTTKVHTFDFETANVLSPVNLASSSFFKRTQIRPIRSMYNVLIKAKINMLLPFGPLAILLHYVTQKHGWVFFFSLLGITPLAERLGYATEQLALYTGPTVGGLLNATFGNATEMIISIYALKNGMIRVVQQSLLGSILSNMLLVLGCAFFTGGIVHQNKVQVFNKASAVVNSGLLLMAVMGILFPAVLHFTHSEVHFGKSELLLSRFSSCIMLVAYASYLFFQLRSQHNLYSPIEEEDGNSENDDEEEIELTKWEAIGWLAILTVWVSVLSGYLVDAIEGASESLHMPVAFISVILLPIVGNAAEHASAIMFAMKDKLDITLGVAIGSSTQISMFVIPFCVVIGWCMGKEMDLNFQLFETATLFITVLVVAFMLQGNSSSKDLLQ 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g1620 407 NCBIfam calcium/proton exchanger 72 399 IPR004798 GO:0006816|GO:0015369
Prci12g1620 407 Gene3D - 120 264 IPR044880 -
Prci12g1620 407 Gene3D - 266 405 IPR044880 -
Prci12g1620 407 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 43 399 IPR004713 GO:0006812|GO:0008324|GO:0016020
Prci12g1620 407 FunFam Vacuolar cation/proton exchanger 266 405 - -
Prci12g1620 407 Pfam Sodium/calcium exchanger protein 279 396 IPR004837 GO:0016020|GO:0055085
Prci12g1620 407 Pfam Sodium/calcium exchanger protein 91 246 IPR004837 GO:0016020|GO:0055085
Prci12g1620 407 NCBIfam calcium/proton exchanger 62 400 - -
Prci12g1620 407 FunFam Vacuolar cation/proton exchanger 120 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g1620 Prci-Chr12 34096234 34106008 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g1620 45 402 Antiporters AT3G13320 73.352 0.0 534
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g1620 K07300 - qsa:O6P43_017901 639.032