Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g1600 ATGAAGCTCCTATTATTTATCCTATGCTTGTCTAATCCATTCTATATCACTTCTACCTTGAATTCGGATGGGCTGATTCTATTGTCTCTCCTCAACCACTGGACTTCTGTGCCTCCTTCTTTGAAGTCCAGCTGGAAATCCTCTGATTCTACCCCTTGTTCTTGGATAGGAATAAAATGCGACCGCTACAGCAACGTGGTCTTCTTAAACCTCACTGCATCTCAGATTTTTGGACAGCTTGGGCCAGAAATTGGACAGTTGACTCACTTGCAGAACCTTTCGTTGGCAATAAATGGTTTCTCAGGAACAATACCCCCAGAGTTAGGCAATTGTAGTCTGCTTGAGTATATTGATCTTTCTAAGAATCAATTGTCTGGAAAAATGCCTCCAGAAATTGGAAACTGCAAATCTTTGAAGTCGTTACGTTTGTATTCCAATCAACTAGAGGGACCAATTCCAAATAAGTTGGGAATACTAAGTCAGCTGGAGGACCTTGAATTGTATTCCAACCATTTGACAGGCAAAATTCCAGTTACCATTTGGAAGATTCAGAGTGTCAAGCATGTCCTTGTTCATGATAATAACCTCACCGGGAAATTGTCTTCTGAGTTGACAGAGCTCAAGCATCTGAAAAATATCTCATTGTCTGACAACCAATTCTTTGGACCAATTCCTCAAGGTTTGGGAATCAATAGTAGTTTAGTGATGCTAAGCTTGATGAATAATACGTTCACTGGTAACATCCCGCCAAATCTTTGTTTTGGAAAGCAACTGCGCACGCTGTATTTAGGTCTTAATCAACTTCAAGGGGGCATACCTCAAGATTTGGGAAAGTGTGCAACTCTTGCACGGTTAGTTCTCAATGACAATAATCTTTCAGGGTCTATTCCTAAATTTGAAGGTAATCAGAATCTTATAATCATAGACATTAGCAAGAACAACATCAGTGGAGTAATTCCATCGAGTTTGGGGAACTGCACAAATCTTATTGGTTTAATGTTGTCCACGAATAACATTATAGGTCTTATACCCTCAGAGCTAGGAAACCTTGTGAAACTTCAGGTTTTAAATCTTGCTCACAATAACCTAGTAGGTATTTTGCCACTGCAACTGTCAAACTGTACACAAATGTCTACATTTGATGTAGGATTTAATTTTCTTAATGGTTCATTCCCATCAAGCATAAGGAGCTGGACTAGAATAAACAGATTGATTTTAAGAGAGAATCATTTCAGTGGGTTTGTCCCATATTTCTTCTCAGAGTATGCTCAGCTTCTCGAGCTACAACTTGGTGGAAATATGATCCAAGGAACAATTCCTGCATCAATTGGATCATTGGTTCACTTGTATGAGTTGAATCTGAGCGCTAATAAATTAACAGTTGGGATCCCCCAAGACGTTGGGAAGTTGAAAATGCTAGAAAGTTTAGATATATCCCTGAACAGTTTGACAGGGAGCATACAAATTCTTGGTGAACTTGTTTCATTAACAGAAGTCAATATATCTTACAACTCATTCTTCGGTCCTTTACCAGAAAGGACGATTCAACTACTGGATTTATATCCATCGTCATTCTTTGGCAATCCTGGCCTTTGTGTTAGTTGTTCGACTTCAGATGGCCCGAGTTGCATAAAAACTAGCCATTTGAAGCCATGCGCCACTAATTCAACTGACCAAGAAGGCAACAAGCATTCGAATTTAGTAGTACTTGGACTAATAGTGTTTGTCATTTGCTGGTCATCTATCATTTTCCTGTCAAGCGTAATTTACCTATCATTTGTCATTTACATCCGCCAGTTTGGTCAAATATCTTACATGGAGGTCAATGTTAACTGTGAAGAGCAAGAGGCTTTGTTTTCAAATCACGAGGGGGGTTTTAGAATTATTGACCTAATGGATGCTACAGATTTTCTACATGATCGATATATAATTGGTGAAGGAGGGCATGGGATTGTTTATAAAGCTGAACTTGGTGTTGGAGTTTTTGCTGTTAAGAAGGTTAAACTTGCAGGGAGCAATAGGAGGAAATTGAACTTGGTCAGAGAAATTGAAATGACTAAGAACTTTAGGCATCAAAATCTAGCAAGATGCTTAGGCTCTTGGATATGTGAAGAATATGGTCTAACCATCAGCAGGTGCATGGAAAATGGAAGCCTTAACGATGTTTTGCATGAAAGCAATCCACAAACATGCTTAGCTTGGAATGTTCGCTATAAGATTGCTATTGGAATAACAAAGGGATTGGCATATCTCCATCATGACTGTGATCCTCCCATATTGCATCGAGACATCAAACCAAAGAATATACTTCTTGATTCTGATATGCAGCCTTGCATTAGTGATTTTGGTATTTCCATTACTTTGGACGAGTTTGCTCTGGCACGTTTGCGGTCAACATATCATCTAGGTACTCGTGGGTTTATGGCACCAGAGATAGCATGTCTGGGAGTTACGAGCTGTGAACTTGATGTATATAGTTATGGGGTGCTTTTGCTTGAGCTGATAACAAGGAAGAAAGTATTGGATTCCTCATTTATGGAAGAGGAAACCACTTTAGTAGTGTGGTTTAAATCTATTTGGAAAAGAACAAGAGAACTTGAAGAGATTGTTGATTCAAGCATTGCAAGGGAGATTTCAGATTTAAATGTAATGGTGCAAGTTATGAAGGTACTTTTGGTGGCTTTAATGTGTACTGAGACAAATCCAGGAAAGAGGCTGAAAATGAGAGATGCTGCTGAATTCTTTGAAACATCCATTGATCCAGGAATTTTTGTTCAACACGACAGAGCTTCATTTCATTTGGGGAATTCTCTTGCTACTGCAGCAGCCTCCATATTTTTTGAGGAGGAAGTCGATATACCTGCCAGTGAAGGTTCTTTCCCAATTCTTCACATACTGATGGACGCTAATACAAACCCAAACAATCTGAATATCATCGGCAGAGGAACTCATGGAGTTGTTTATAAAGTTCCACTAGGTCCAGTCCTAGTTTATGCAGTAAAGAAGGTAGCATTTGCTGGGAACAAAAGGAAGATCCAAAGCATAGTTAGAGAAGTTAAAATCCTTGGAAAGATTAGGCACCCAAATATAGTCAGATTGCTAGACTTTTCGTTTACAAAGGACTATTGTCTAATCTTGTACAATTACATGATAAATGGAAACCTTCATGATGTTTTACATGAAACGAACCCACCTCCATCCCTGGAGTGGAATGTCCGTTATAGGATAGCTGCTGGAATTGCTGAAGGATTGGCTCATCTCCACTATGTGCGCCTTCCCGCCATAGTGCACTGTGACATCAAAGCAAAAAATATACTTCTGGACTCTGATATGGAGCCCCATATAGCTGATTTTGAGAATGCATATACAACAGCAAATACTAGGGAGTTTGATGTCTACAGTTATGGGGTAGTGTTGCTTCAGTTAATAACCAGAAAGAAGGCAATGGATCTATCATTTATGGAGGGAACTGAGGTAGGAATTTGGGTTAGAACTCTGTGGGAGGAAACAGGAGACATTCATAAAATTGTTGATTCAAGCCTTGCAGAAGAGGTTAGGAGGAATTCAGATGTACTTGAACCAGTTACCAAATTGCTTTTGCTGGCTCTGAGTTGCACAGAGCAGAATCCACACATGAGACCCACAATGAGAGATGTTACCAAGCAATTACAAGATAAAGAAAGCTTCCAAGTTCCAACTCCTTAA 3705 0.3943 MKLLLFILCLSNPFYITSTLNSDGLILLSLLNHWTSVPPSLKSSWKSSDSTPCSWIGIKCDRYSNVVFLNLTASQIFGQLGPEIGQLTHLQNLSLAINGFSGTIPPELGNCSLLEYIDLSKNQLSGKMPPEIGNCKSLKSLRLYSNQLEGPIPNKLGILSQLEDLELYSNHLTGKIPVTIWKIQSVKHVLVHDNNLTGKLSSELTELKHLKNISLSDNQFFGPIPQGLGINSSLVMLSLMNNTFTGNIPPNLCFGKQLRTLYLGLNQLQGGIPQDLGKCATLARLVLNDNNLSGSIPKFEGNQNLIIIDISKNNISGVIPSSLGNCTNLIGLMLSTNNIIGLIPSELGNLVKLQVLNLAHNNLVGILPLQLSNCTQMSTFDVGFNFLNGSFPSSIRSWTRINRLILRENHFSGFVPYFFSEYAQLLELQLGGNMIQGTIPASIGSLVHLYELNLSANKLTVGIPQDVGKLKMLESLDISLNSLTGSIQILGELVSLTEVNISYNSFFGPLPERTIQLLDLYPSSFFGNPGLCVSCSTSDGPSCIKTSHLKPCATNSTDQEGNKHSNLVVLGLIVFVICWSSIIFLSSVIYLSFVIYIRQFGQISYMEVNVNCEEQEALFSNHEGGFRIIDLMDATDFLHDRYIIGEGGHGIVYKAELGVGVFAVKKVKLAGSNRRKLNLVREIEMTKNFRHQNLARCLGSWICEEYGLTISRCMENGSLNDVLHESNPQTCLAWNVRYKIAIGITKGLAYLHHDCDPPILHRDIKPKNILLDSDMQPCISDFGISITLDEFALARLRSTYHLGTRGFMAPEIACLGVTSCELDVYSYGVLLLELITRKKVLDSSFMEEETTLVVWFKSIWKRTRELEEIVDSSIAREISDLNVMVQVMKVLLVALMCTETNPGKRLKMRDAAEFFETSIDPGIFVQHDRASFHLGNSLATAAASIFFEEEVDIPASEGSFPILHILMDANTNPNNLNIIGRGTHGVVYKVPLGPVLVYAVKKVAFAGNKRKIQSIVREVKILGKIRHPNIVRLLDFSFTKDYCLILYNYMINGNLHDVLHETNPPPSLEWNVRYRIAAGIAEGLAHLHYVRLPAIVHCDIKAKNILLDSDMEPHIADFENAYTTANTREFDVYSYGVVLLQLITRKKAMDLSFMEGTEVGIWVRTLWEETGDIHKIVDSSLAEEVRRNSDVLEPVTKLLLLALSCTEQNPHMRPTMRDVTKQLQDKESFQVPTP 1234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g1600 1234 SMART serkin_6 973 1229 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci12g1600 1234 SMART serkin_6 638 915 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci12g1600 1234 Gene3D Ribonuclease Inhibitor 303 557 IPR032675 -
Prci12g1600 1234 Pfam Leucine rich repeat N-terminal domain 21 61 IPR013210 -
Prci12g1600 1234 ProSitePatterns Serine/Threonine protein kinases active-site signature. 759 771 IPR008271 GO:0004672|GO:0006468
Prci12g1600 1234 ProSiteProfiles Protein kinase domain profile. 638 915 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci12g1600 1234 SUPERFAMILY Protein kinase-like (PK-like) 626 914 IPR011009 -
Prci12g1600 1234 Gene3D Transferase(Phosphotransferase) domain 1 714 921 - -
Prci12g1600 1234 Gene3D Ribonuclease Inhibitor 20 181 IPR032675 -
Prci12g1600 1234 Gene3D Ribonuclease Inhibitor 182 302 IPR032675 -
Prci12g1600 1234 Gene3D Phosphorylase Kinase; domain 1 608 710 - -
Prci12g1600 1234 ProSiteProfiles Leucine-rich repeat profile. 352 373 IPR001611 GO:0005515
Prci12g1600 1234 FunFam Leucine-rich repeat receptor-like protein kinase TDR 228 545 - -
Prci12g1600 1234 Pfam Leucine rich repeat 304 363 IPR001611 GO:0005515
Prci12g1600 1234 Pfam Protein kinase domain 976 1122 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci12g1600 1234 Pfam Protein kinase domain 642 910 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci12g1600 1234 ProSiteProfiles Protein kinase domain profile. 973 1229 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci12g1600 1234 ProSitePatterns Protein kinases ATP-binding region signature. 644 666 IPR017441 GO:0005524
Prci12g1600 1234 ProSitePatterns Protein kinases ATP-binding region signature. 979 1002 IPR017441 GO:0005524
Prci12g1600 1234 Gene3D Transferase(Phosphotransferase) domain 1 1126 1231 - -
Prci12g1600 1234 SMART LRR_typ_2 446 470 IPR003591 -
Prci12g1600 1234 SMART LRR_typ_2 87 111 IPR003591 -
Prci12g1600 1234 SMART LRR_typ_2 159 183 IPR003591 -
Prci12g1600 1234 SMART LRR_typ_2 350 373 IPR003591 -
Prci12g1600 1234 SUPERFAMILY Protein kinase-like (PK-like) 962 1223 IPR011009 -
Prci12g1600 1234 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1095 1107 IPR008271 GO:0004672|GO:0006468
Prci12g1600 1234 Gene3D Transferase(Phosphotransferase) domain 1 964 1125 - -
Prci12g1600 1234 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 19 180 - -
Prci12g1600 1234 SUPERFAMILY L domain-like 22 304 - -
Prci12g1600 1234 SUPERFAMILY L domain-like 271 529 - -
Prci12g1600 1234 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 145 912 - -
Prci12g1600 1234 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 714 920 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g1600 Prci-Chr12 33894876 33901838 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g1600 65 916 Receptor kinase-like Gene Family AT1G73080 44.251 0.0 657
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Prci12g1600 Pkinase 3.2e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g1600 - - pcin:129289575 2424.82