Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g1571 ATGACCTCCACATCTCGAGGCTCCAACGGTGCCTCCAATCATAATAATGGCTTCATCACCGTCACCATCGCCGCGCATCCGGATGGCGAACCTCCTTCTTCCTCCATCGTCCATGACGAAGACTTGCCGGTGGATCCGGAAGATCCTTTCGATATTGCTCAGACCAAGAATGCGCCTCCCGAGGCCCTCCGGCGATGGAGACAAGCAGCACTTGTGCTCAATGCCTCACGGCGTTTTCGTTATACTTTGGACCTGAAAAAAGAAGAAGAGAAACAACAAAAGAAAAACTTGATTAGAGCCCACGCACAAGTCGTAAGAGCAGCATTGCTTTTCAAATTGGCCGGTGAACGTGAAATAGTAATAACTACCCCTGCGCTATCCCCAGCTCGAGTCAGTGTCAGTGATTTTGCAGTTGGGCTTGAAGAACTTGTCTCAATGTTTAAGGATCATAACATTTCTGCTTTAGAGCGATATGGAGGGGTTAAAGGTTTATCGAGTTTACTACAATCAAGTCCCGAGAAGGGGATTAATGGGAGTAATGATGATCTATTAAGAAGGAGAACAGCATTTGGAACAAATACTTATCCTCGGAAAAAGGGGAGAAGTTTCTTTATGTTCCTATGGGAAGCTTGGCAAGATCTGACCCTAATCATATTGATAATAGCAGCTGCAGTATCATTAGTATTGGGAATAAAAACAGAGGGTCTGAAAGAAGGGTGGTACGATGGGGGAAGTATTGCTTTTGCAGTTTTTCTTGTCATTGTAGTTACAGCTGTTAGTGATTATCGGCAATCTCTGCAGTTTCAGAATTTGAATGCAGAAAAACAAAATATACAACTAGAGGTCATTAGAGGTGGTAGAATAGTAAAGATATCAATATTTGATGTTGTTGTTGGTGATGTTGTGCCTCTTAAAATAGGAGATCAGGTTCCTGCTGATGGAGTTTTAATCACCGGCCACTCACTTGCCATTGATGAATCTAGCATGACTGGTGAAAGCAAGATTGTTCATAAAGACCATAAAGCACCATTTTTGATGTCTGGCTGCAAAGTAGCAGATGGAGTTGCTGCTATGCTGGTAACTGGAGTTGGTATCAATACTGAGTGGGGACTGTTGATGGCAAGTATCTCGGAAGATACTGGCGAAGAGACTCCATTGCAGGTACGTTTGAATGGAGTAGCGACTTTTATTGGTATAGCAGGGCTTTCAGTAGCTGCCATTGTGTTGGCTGTCCTCTTGGGAAGATACTTTTCTGGAAGTACAAAGGATCTGGATGGAAATGTTGAGTTTGTCGGTGGACAGACTAGCGTTAGTAGCGCAGTAGATGGGGTCATCAAAATTTTTACTATAGCTGTCACTATTGTGGTTGTTGCAGTACCTGAAGGTCTTCCCTTGGCTGTCACCTTAACCCTTGCTTACTCAATGCGAAAGATGATGGCTGACAAAGCCTTGGTTCGAAGGCTCTCAGCTTGTGAAACTATGGGTTCTGCTACAACAATTTGCAGTGATAAGACAGGAACATTGACATTGAATCAGATGACTGTAGTTGAGGCATATGTCGGGAAGAAGAATATCAAGCTACCGGAGGACTTACCAAATTTGCACTCAGAAGTTGTATCTCTAATAAATGAGGGTGTTGCACAGAATACTAGCGGAAATGTTTTTGAGCCCAAGGGTTGTGGAGAAGTAGAAATTTCGGGATCTCCTACAGAAAAGGCAATCCTTTCTTGGGCTGTCAAGTTGGGAATGAAATTCGATCTTGCCAAGTCAAATTCAACAATTCTACATGTCTTCCCCTTCAACTCGGAGAAAAAGCGAGGGGGTGTTGCGCTGAAGCTGGCGGACTCCAGTGTGCACATTCATTGGAAAGGAGCTGCGGAGATAGTTCTAGGCTCATGTACTCAATACCTTGATTCAAATGGTCATTTGCAATCAATTGATGCCGAGGACTTTTTCAAGCAGGCTATTGATGACATGGCTGCTCGCAGCTTGCGGTGTGTTGCCATTGCATATAGATCATATGAAACGGACAAAGTTCCCTCTAATGAGGATGATTTGGCCAAGTGGTCCTTGCCTGAGGATGAACTTGTTTTGCTTGCTATTGTTGGTATAAAGGATCCCTGTCGCCCTGGAGTCAAAGATGCTGTCAAATTATGCACTGAAGCTGGGGTTAAGGTACGCATGGTCACTGGAGACAATATTCAGACGGCAAAGGCAATAGCTTTGGAGTGTGGGATACTTTCTTCAAATGAAGATCTCGCTGAGCCAAATGTAATTGAAGGAAAGAGATTTCGTTCGTTATCTGAAAATGATAGGGAACATGTTGCTAAACAAATAACAGTTATGGGGAGATCTTCTCCAAATGACAAGCTTTTGCTTGTGCAAGCACTGCGCAAGGGAGGAGAAGTTGTTGCTGTCACAGGAGATGGCACTAATGATGCGCCTGCACTTCACGAGGCAGATATTGGTCTTTCAATGGGCATTCAAGGAACTGAAGTTGCAAAAGAAAGCTCAGATATCATAATCCTGGATGATAACTTTGCATCGGTAGTGAAGGTTGTCCGATGGGGCCGTTCTGTATATGCAAATATTCAGAAATTTATCCAGTTCCAGCTCACAGTTAATGTTGCAGCTCTTGTTATAAATGTTGTGGCTGCAATATCTTCTGGTGATGTTCCTTTAAATGCAGTGCAGCTTTTGTGGGTCAACCTTATCATGGACACTCTTGGGGCCCTTGCATTGGCCACTGAACCACCAACGGACCATCTTATGCACAGATCACCAGTTGGCAGAAGGGAATCTCTTATAACAAATATTATGTGGAGGAACTTGCTCATACAGGCTTTATATCAAGTTACTGTTCTACTTGTTCTGAACTTCGGCGGCGATCAAATTCTGCGAAGTCATTACTCTAGAGCTCGTACACATCAACTGAAGAATTCTTTGATATTCAATGCATTTGTCCTCTGCCAAATATTCAATGAGTTCAACGCTCGGAAACCAGACGAAATGAATGTCTTCCGTGGAGTGACTAAGAACCACCTCTTCATTGGAATTGTTGCAATCACCTTTGTACTTCAGATACTCATCATCGAGTTCCTTGGAAAGTTCACGAAAACCGTGAGGCTTGATTGGAAGATGTGGCTTATTTCTCTTGCTATAGGGCTGTTCAGCTGGCCCCTGGCTGTAGTGGGAAAATTAATTCCTGTTTCAAAAACACCACTCTCACGGTACATGTTAAAGCCATTGAGGCGATGCTGGAAGCCTCGTGGTTTATGA 3279 0.4364 MTSTSRGSNGASNHNNGFITVTIAAHPDGEPPSSSIVHDEDLPVDPEDPFDIAQTKNAPPEALRRWRQAALVLNASRRFRYTLDLKKEEEKQQKKNLIRAHAQVVRAALLFKLAGEREIVITTPALSPARVSVSDFAVGLEELVSMFKDHNISALERYGGVKGLSSLLQSSPEKGINGSNDDLLRRRTAFGTNTYPRKKGRSFFMFLWEAWQDLTLIILIIAAAVSLVLGIKTEGLKEGWYDGGSIAFAVFLVIVVTAVSDYRQSLQFQNLNAEKQNIQLEVIRGGRIVKISIFDVVVGDVVPLKIGDQVPADGVLITGHSLAIDESSMTGESKIVHKDHKAPFLMSGCKVADGVAAMLVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIAGLSVAAIVLAVLLGRYFSGSTKDLDGNVEFVGGQTSVSSAVDGVIKIFTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTVVEAYVGKKNIKLPEDLPNLHSEVVSLINEGVAQNTSGNVFEPKGCGEVEISGSPTEKAILSWAVKLGMKFDLAKSNSTILHVFPFNSEKKRGGVALKLADSSVHIHWKGAAEIVLGSCTQYLDSNGHLQSIDAEDFFKQAIDDMAARSLRCVAIAYRSYETDKVPSNEDDLAKWSLPEDELVLLAIVGIKDPCRPGVKDAVKLCTEAGVKVRMVTGDNIQTAKAIALECGILSSNEDLAEPNVIEGKRFRSLSENDREHVAKQITVMGRSSPNDKLLLVQALRKGGEVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAISSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRRESLITNIMWRNLLIQALYQVTVLLVLNFGGDQILRSHYSRARTHQLKNSLIFNAFVLCQIFNEFNARKPDEMNVFRGVTKNHLFIGIVAITFVLQILIIEFLGKFTKTVRLDWKMWLISLAIGLFSWPLAVVGKLIPVSKTPLSRYMLKPLRRCWKPRGL 1092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g1571 1092 SFLD p-type atpase 483 859 IPR044492 -
Prci12g1571 1092 FunFam Calcium-transporting ATPase 9 plasma membrane-type 355 525 - -
Prci12g1571 1092 CDD P-type_ATPase_Ca_PMCA-like 183 940 - -
Prci12g1571 1092 Pfam Cation transporting ATPase, C-terminus 892 1068 IPR006068 -
Prci12g1571 1092 ProSitePatterns E1-E2 ATPases phosphorylation site. 503 509 IPR018303 -
Prci12g1571 1092 SUPERFAMILY HAD-like 499 912 IPR036412 -
Prci12g1571 1092 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 507 712 IPR023299 GO:0000166
Prci12g1571 1092 Pfam Ca2+-ATPase N terminal autoinhibitory domain 48 90 IPR024750 GO:0005516
Prci12g1571 1092 FunFam Calcium-transporting ATPase 700 852 - -
Prci12g1571 1092 Gene3D - 180 377 - -
Prci12g1571 1092 NCBIfam calcium-translocating P-type ATPase, PMCA-type 151 1070 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Prci12g1571 1092 Pfam E1-E2 ATPase 278 479 - -
Prci12g1571 1092 Gene3D - 60 113 - -
Prci12g1571 1092 SUPERFAMILY Calcium ATPase, transmembrane domain M 158 1071 IPR023298 -
Prci12g1571 1092 PRINTS Sodium/potassium-transporting ATPase signature 620 638 - -
Prci12g1571 1092 PRINTS Sodium/potassium-transporting ATPase signature 244 264 - -
Prci12g1571 1092 PRINTS Sodium/potassium-transporting ATPase signature 494 515 - -
Prci12g1571 1092 SMART Cation_ATPase_N_a_2 157 231 IPR004014 -
Prci12g1571 1092 Gene3D - 511 707 IPR023299 GO:0000166
Prci12g1571 1092 FunFam Calcium-transporting ATPase 209 266 - -
Prci12g1571 1092 PANTHER CATION TRANSPORTING ATPASE 99 1070 - -
Prci12g1571 1092 FunFam Calcium-transporting ATPase 256 377 - -
Prci12g1571 1092 Pfam haloacid dehalogenase-like hydrolase 498 821 - -
Prci12g1571 1092 Gene3D - 498 852 IPR023214 -
Prci12g1571 1092 PRINTS P-type cation-transporting ATPase superfamily signature 722 732 - -
Prci12g1571 1092 PRINTS P-type cation-transporting ATPase superfamily signature 807 826 - -
Prci12g1571 1092 PRINTS P-type cation-transporting ATPase superfamily signature 325 339 - -
Prci12g1571 1092 PRINTS P-type cation-transporting ATPase superfamily signature 501 515 - -
Prci12g1571 1092 PRINTS P-type cation-transporting ATPase superfamily signature 700 711 - -
Prci12g1571 1092 PRINTS P-type cation-transporting ATPase superfamily signature 831 843 - -
Prci12g1571 1092 Pfam Cation transporter/ATPase, N-terminus 159 226 IPR004014 -
Prci12g1571 1092 NCBIfam HAD-IC family P-type ATPase 773 887 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Prci12g1571 1092 NCBIfam HAD-IC family P-type ATPase 438 524 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Prci12g1571 1092 SFLD C1.7: P-type atpase like 483 859 - -
Prci12g1571 1092 Gene3D - 209 1059 - -
Prci12g1571 1092 SUPERFAMILY Calcium ATPase, transduction domain A 279 374 IPR008250 -
Prci12g1571 1092 FunFam Calcium-transporting ATPase 511 707 - -
Prci12g1571 1092 FunFam Calcium-transporting ATPase 824 1072 - -
Prci12g1571 1092 FunFam Calcium-transporting ATPase 58 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g1571 Prci-Chr12 33640116 33661268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g1571 11 1085 Primary Pumps ATPases AT3G21180 74.423 0.0 1612
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g1571 K01537 - gmx:100777845 1694.48