Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g1545 ATGAGGCCTTTGAAAACTATTGCTAAAAGATCTGGTGATGTTTATATTCCTCGTGGTGTCTCTGTTCCAGCGCTTGATAAAGATACACTTTGGGAGTTTCAGCCTAAAAAAATTGGTGAATGGGACCTTTTGACTGGTGGAGATTTATACGCTACGGTTTTTGAGAACAGTTTAATGCAACACCACGTTGCACTTCCTCCTGATGCAATGGGAAAAATAACATACATTGCCCCACCTGGTCAATATTCCCTGAAGGATACTGTGTTGGAGCTTGAGTTTCAAGGTGTCAAAAAACAGTTCACAATGCTTCAGACATGGCCTGTGCGAACTCCGAGGCCTGTTGCATCAAAACTAGCAGCTGACACTCCTCTGCTTACGGGTCAGCGTGTTCTTGATGCCCTTTTCCCTTCTGTTCTTGGCGGGACTTGTGCAATACCTGGAGCTTTTGGTTGTGGTAAAACTGTCATTAGTCAGGCTCTTTCAAAGTATTCCAACTCTGATGCTGTTGTTTATGTTGGTTGTGGGGAACGTGGAAATGAAATGGCAGAGGTCTTGATGGACTTTCCACAACTTACAATGACATTACCTGATGGCCGAGAAGAATCTGTTATGAAGCGAACAACGCTGGTGGCTAACACTTCAAACATGCCTGTGGCTGCTCGTGAGGCTTCAATTTATACAGGAATCACTCTAGCTGAGTACTTTAGAGATATGGGCTACAATGTCAGCATGATGGCAGATTCAACATCTAGATGGGCAGAAGCATTGCGTGAAATCTCTGGACGGCTGGCAGAAATGCCTGCAGATAGTGGATATCCTGCTTACCTTGCTGCACGTTTAGCTTCTTTCTATGAACGTGCTGGCAAAGTAAAATGCCTTGGAGGTCCCGAACGTACTGGTAGCATCACAATTGTTGGTGCTGTTTCTCCACCTGGAGGAGATTTCTCTGATCCTGTGACATCTGCAACCCTTAGCATAGTTCAGGTTTTCTGGGGTTTGGACAAAAAGCTTGCCCAAAGGAAGCATTTTCCTTCTGTGAACTGGCTTATTTCCTATTCAAAGTACTCGGGTGCATTGGAATCCTTCTATGAGCAATTTGATCCAGATTTCATAAACATTAGGACAAAGGCTCGTGAAGTGCTGCAGAGAGAAGATGACCTCAATGAAATTGTCCAACTTGTAGGCAAGGACGCTTTAGCTGAAGGAGATAAGATCACATTAGAAACTGCAAAGCTTTTGAGAGAGGATTATCTTGCTCAGAATGCTTTTACTCCATATGACAAATTCTGTCCCTTCTATAAATCTGTTTGGATGATGCGCAACATTATCCATTTCTACAACTTGGCAAATCAGGCAGTGGAGAGGGGAGCTGGTACAGATGGTCAGAAGATCACATACACCCTCATTAAGCATCGTTTGGGAGATCTCTTCTACCGTTTAGTGTCGCAGAAATTTGAAGATCCAGCAGAAGGTGAAGCAGCTCTGGTTGGCAAATTTAAGAAGCTTCATGAGGACCTGACTAACGGTTTCCGCAATCTTGAGGATGAAACCCGATAG 1557 0.4406 MRPLKTIAKRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEWDLLTGGDLYATVFENSLMQHHVALPPDAMGKITYIAPPGQYSLKDTVLELEFQGVKKQFTMLQTWPVRTPRPVASKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDAVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITLAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSITIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSGALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVERGAGTDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEAALVGKFKKLHEDLTNGFRNLEDETR 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g1545 518 CDD V_A-ATPase_A 102 355 - -
Prci12g1545 518 Gene3D - 29 100 - -
Prci12g1545 518 FunFam V-type proton ATPase catalytic subunit A 354 507 - -
Prci12g1545 518 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 366 449 - -
Prci12g1545 518 Gene3D - 354 503 IPR024034 -
Prci12g1545 518 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 97 358 IPR027417 -
Prci12g1545 518 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 127 353 IPR000194 GO:0005524
Prci12g1545 518 NCBIfam V-type ATPase subunit A 2 506 IPR005725 GO:0016887|GO:0033180|GO:0046961|GO:1902600
Prci12g1545 518 Gene3D - 2 352 IPR027417 -
Prci12g1545 518 FunFam V-type proton ATPase catalytic subunit A 29 100 - -
Prci12g1545 518 CDD ATP-synt_V_A-type_alpha_C 370 476 - -
Prci12g1545 518 FunFam V-type proton ATPase catalytic subunit A 88 352 - -
Prci12g1545 518 PANTHER V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A 2 516 IPR022878 GO:0046034|GO:0046961
Prci12g1545 518 ProSitePatterns ATP synthase alpha and beta subunits signature. 344 353 IPR020003 GO:0005524
Prci12g1545 518 Pfam ATPsynthase alpha/beta subunit N-term extension 2 118 IPR031686 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g1545 Prci-Chr12 33351742 33356926 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g1545 2 518 Primary Pumps ATPases(2) AT1G78900 93.617 0.0 1005
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g1545 K02145 - gmx:100775727 1017.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci12g1545 12 33351742 33356926 Prci12g1545 12 33351742 33356926 ECH