Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g1476 ATGGCAGGAACTCAATCATCGAACAGAGCCACCACCACAAAGATCAGAAGGTTCATAGGGGTGAGGCAAAGGCCTTCAGGAAGGTGGGTGGCTGAGATCAAAGACTCATCTCAACACGTGAGGCTATGGCTTGGAACCTACGACACGCCAGAGGAAGCGGCTCGGGCTTATGACGAGGCGGCTCGAACCCTACGCGGCGAAAACGCCCGAACCAACTTCGCGTCGCTGCCGATGAGCCACTCAGCCACAGGCGATGAGTCTGGGTCCGAACCCAAGCATGGGCTAAGTTTTGCTTCGTTGAAAGCTAAGCTGATGAGCAAGAATCTTCAGAGTATAATGAACAGATCAGGAAGTGATCAAACGACGTCGTCCAAGAGTAGGGTGAGTGACCATATGACCTTCGCTAGCCTATTTTATCCCAGGAGGAGTTTCCTACCGTACCAGATCTCTTCATCACCTGATGCAATGAAGAACATGGAGATTATGGTGCAGCCTAGTATTATAGTGCCTCCTGCTGAAACTGATAATTATAACAATCAAGAGCCGTGTGGTTCTTGGGAAAATTCCTGTGTTTCTGATCATTGTAGCTCTGATCACCGGTGGGTAGGGTTGCAGAAACCTATGACGGAATCCGCCATGTCCGACGGGTCGGCTGCTGGGGAGGAGGCTATAATGGAGCAAGTGGTGATCGGGTGGATCAATAATAGCAGCCCGGAGGAGGAATCAAGGAGTAAGAGGCTTAAGGTGTCTTCCTCAGTATTTGTGCCTCCAACTTTTAGTGGATCTCCATGTAGTAGTAGTTGTGGCTCTCCCTATTATGGTTATGCTTCTCCATACATATGA 843 0.4982 MAGTQSSNRATTTKIRRFIGVRQRPSGRWVAEIKDSSQHVRLWLGTYDTPEEAARAYDEAARTLRGENARTNFASLPMSHSATGDESGSEPKHGLSFASLKAKLMSKNLQSIMNRSGSDQTTSSKSRVSDHMTFASLFYPRRSFLPYQISSSPDAMKNMEIMVQPSIIVPPAETDNYNNQEPCGSWENSCVSDHCSSDHRWVGLQKPMTESAMSDGSAAGEEAIMEQVVIGWINNSSPEEESRSKRLKVSSSVFVPPTFSGSPCSSSCGSPYYGYASPYI 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g1476 280 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Prci12g1476 280 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Prci12g1476 280 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 15 174 - -
Prci12g1476 280 SMART rav1_2 17 80 IPR001471 GO:0003700|GO:0006355
Prci12g1476 280 CDD AP2 17 74 IPR001471 GO:0003700|GO:0006355
Prci12g1476 280 SUPERFAMILY DNA-binding domain 18 74 IPR016177 GO:0003677
Prci12g1476 280 ProSiteProfiles AP2/ERF domain profile. 17 74 IPR001471 GO:0003700|GO:0006355
Prci12g1476 280 FunFam ethylene-responsive transcription factor RAP2-11 11 75 - -
Prci12g1476 280 Pfam AP2 domain 17 66 IPR001471 GO:0003700|GO:0006355
Prci12g1476 280 Gene3D AP2/ERF domain 16 75 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g1476 Prci-Chr12 31458538 31459524 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g1476 17 75 AP2-EREBP Transcription Factor Family AT5G19790 72.881 2.80e-26 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Prci12g1476 AP2 1.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g1476 K09286 - qsa:O6P43_017554 234.958