Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g1467 ATGGCTGTGTTTGCTTCTGCTTCTTCTTCCCGAGTGAAATATGATGTTTTCATCAGCTTTCGAGGTTCAGACATCAGATCTGGTTTCCTCAGCCATTTAACAAAGGAGCTGCGTCGAAAGCAGGTAGACGTCTATGTGGATGACAGGCTGGAGAGAGGAGATCAAATATCGTCTGCACTTGACGAAGCCATAGAAGGATCAATGATTGCGTTGGTCATATTCTCCAAAGATTATGCTTCTTCAAAGTGGTGCTTGCAAGAGCTTGTCAAAATCATGGAATGTAAGGAAGCAAGCGGACAAATTGTGTTACCAGTTTTCTATTGTGTAGATCCTTCAGATGTCAGGCGTCAAAAACGAACTTATGCAGATGCATTTGCACATCTTGAACTGAAGTTCAAGGATAACTCAAACGAGTTGAAAAATTGGAGATCTGTCTTGAAGAAAACCGCAGACTTATCTGGTTATCATTCATCAAATTTTCAAAACGAATCACAGCTCATTGATGCAATACTCCAAGATGTCCTAAAAAAATTGGAAGATAACAACCCGGTTGCGCCACAATCCCATCTAGTTGGATTGGATCAAAATCTCGCCATTGTTGAATCATTAATGAAAATTACGTCACAGGAAGTTCTACTTCTTGGTATTTGGGGTGTTGGTGGGATAGGCAAAACAACCCTGGCTCGAGCTACATTTGACAAATTCTCTTCTCAATTTGAAAGCTATTGCTTCATAGAAAATGTGAGAGAGGAATCAACGAAGAGCAATGGTTTGAGTCATTTGCGTCAAAAGCTTCTTTCTAAGCTATTAGACCAAGATGCAGGTCTCCCCATAGATATGAATTATGCAAGGAGAAGGCTATCACGAAAAAGAGTCTTGATTGTGCTTGATGATGTATCCAATTCAAAGCAATTAAAAGATCTAGCTGGACAACAACTTTGCTTGGGGCGTGGCAGCAGAGTAATTGTAACAAGTAGAGACAAGCATGTTTTTAGGATTGGAGGGATTCATGATGAATATATACATGAAGTCAAGGAGTTGAATTTTGAAGAATCACTAAAACTTTTTAGTTTACATGCCTTCAAGCAAACTCACCCTAATGTGGGATATGAAAGGCTATCAGAAATGACAGTTGCCTATGCTAAAGGCATTCCTCTAGCTTTAGAAGTTTTGGGTTCCCATTTTCATTCTAGAGATAAGGCATACTGGGAGAGTGAGCTTGAGAAACTTAGAAAGTGTCCCCATCCAGAAATTCAAAATATATTGAAAGTTAGTTATGATGGATTAGATGACATGGATAAGGAAATATTTTTAGACATTGCATTTTTTTTCATTGGAGAAGAAAAAGATAGAGTTATTCATGTGCTAGAAGCTTGTGGTTTTAAAGCAGTTAGTGGAATACAAAATCTCATGGATAAATCTCTCATAAAACCAGGTTGGCTGAATGGTAAAAGTACTGAAATGCATGATTTGATACGAGAAATGGCTAAGCAAATAGTTCGTGCGGAATGTATTAAAGATCCTGCATTACGTAGCCGATTAAAAGATACAGATGAAATTTATAATGTATTAGAAAGTAACATGGGAACTAATAAAATTGAAGGCATCATATTGGATTTGGATCAAATCAAACATTTACAATTGGACCCAGACACCTTTGCAAAGATGAAAAATTTAAGATTTCTCAAAATTTTTCACCCTAAACCACGGATGATTGAGCACAAGACATATCATCATATAGAGCTTCCTTTTGGTCTGGGCTCTTTTCCAAAGAAATTAAGACAGCAATATTAA 1794 0.3746 MAVFASASSSRVKYDVFISFRGSDIRSGFLSHLTKELRRKQVDVYVDDRLERGDQISSALDEAIEGSMIALVIFSKDYASSKWCLQELVKIMECKEASGQIVLPVFYCVDPSDVRRQKRTYADAFAHLELKFKDNSNELKNWRSVLKKTADLSGYHSSNFQNESQLIDAILQDVLKKLEDNNPVAPQSHLVGLDQNLAIVESLMKITSQEVLLLGIWGVGGIGKTTLARATFDKFSSQFESYCFIENVREESTKSNGLSHLRQKLLSKLLDQDAGLPIDMNYARRRLSRKRVLIVLDDVSNSKQLKDLAGQQLCLGRGSRVIVTSRDKHVFRIGGIHDEYIHEVKELNFEESLKLFSLHAFKQTHPNVGYERLSEMTVAYAKGIPLALEVLGSHFHSRDKAYWESELEKLRKCPHPEIQNILKVSYDGLDDMDKEIFLDIAFFFIGEEKDRVIHVLEACGFKAVSGIQNLMDKSLIKPGWLNGKSTEMHDLIREMAKQIVRAECIKDPALRSRLKDTDEIYNVLESNMGTNKIEGIILDLDQIKHLQLDPDTFAKMKNLRFLKIFHPKPRMIEHKTYHHIELPFGLGSFPKKLRQQY 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g1467 597 Gene3D - 346 430 IPR042197 -
Prci12g1467 597 FunFam Disease resistance protein (TIR-NBS-LRR class) 10 180 - -
Prci12g1467 597 Pfam TIR domain 13 184 IPR000157 GO:0007165
Prci12g1467 597 ProSiteProfiles TIR domain profile. 12 178 IPR000157 GO:0007165
Prci12g1467 597 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 594 IPR044974 GO:0006952
Prci12g1467 597 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 155 IPR035897 -
Prci12g1467 597 Gene3D - 7 178 IPR035897 -
Prci12g1467 597 SMART till_3 13 152 IPR000157 GO:0007165
Prci12g1467 597 FunFam Disease resistance protein (TIR-NBS-LRR class) 348 430 - -
Prci12g1467 597 SUPERFAMILY "Winged helix" DNA-binding domain 417 504 IPR036390 -
Prci12g1467 597 PRINTS Disease resistance protein signature 286 300 - -
Prci12g1467 597 PRINTS Disease resistance protein signature 381 395 - -
Prci12g1467 597 PRINTS Disease resistance protein signature 213 228 - -
Prci12g1467 597 Gene3D - 179 335 IPR027417 -
Prci12g1467 597 Pfam NB-ARC domain 198 416 IPR002182 GO:0043531
Prci12g1467 597 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 440 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g1467 Prci-Chr12 31277580 31283443 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g1467 9 594 WRKY Transcription Factor Family AT4G12020 32.487 4.58e-76 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g1467 - - pcin:129287860 1179.47