Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g1446 ATGGCTGCTTCTGCTTCTTCTTCCCAAGTGAAACATGATGTTTTCATCAGCTTTAGAGGTTCAGACATCAGATCTGGTTTTCTCAGCCATTTGAAAAAGGAGCTGCGTCGAAAGCAGGTAGACGTCTATGTGGATGACAGGCTGGAGAGAGGAGATGAAATATCATCTGCACTTGACGAAGCCATAGAAGGATCAATGATTGCATTAGTGATATTCTCTAAAGAATATGCTTCTTCAAAGTGGTGCTTGCAAGAGCTTGTCAAGATAATGGAACGCAAGGAAACGAGTCAACAAATTGTGATTCCAATTTTTTACTACGTACCTCCAACAGATGTCAGGAATCAAACAGGCGCTTATGCAGAATCATTTAATGATCACGAACAGAGGTTCAAGGATAACATGGACAAGTTGAAAATTTGGAGATCTGTCTTGACGAAAACCGCAAACTTATCTGGTCATGACTCACCAAATTTTCAAGACGAATCCGAGCTCATTGATGCAATAGTCATGGATGTCCTAAAAAAGTTGAAAGTTGACAACCATTCTGTGCCTACATCCCAACTTGTTGGATCGCATGAAAATCTCGGTAGTGTTGAATCATTGATGGAAATTAATGAGTCACAAGAAGTTCGATTTATTGGAATTTGGGGAATGGGAGGGATAGGCAAAACAACCCTTGCCCGAGAGATATATAACAGATTCTCGTCTGAATTTGGAAGTCATTGCTTCTTGGACAAAGTGAGAGAAGAATCAACAGGGATTACTAGTCTGTATGGAAAACTTCTTTATGAGCTATTTGGTGAAAAGGATCTCCACAAAAATATGAATGATGCAAAGAGAAGGCTGCAACGAGTAAAAGCCTTAATTGTGCTTGACGATGTGGACAATCCAAGTCAACTAAAAGGAGCCGGGCAAATACTTATTAATTTGGGATTGGGCAGCAGAGTCATTGTAACAAGTAGAGACAAGCATGTTCTTAGGAGTGGACGGATTGATGAAAAATATATACATGAAGTTAAGGGATTGAAATTTGATGAATCACTTGAACTTTTTAGTTCACATGCTTTTGATCAAAGTTATCCCAAAGTAGGATATGAAGAGCTATCAAAAATGATAGTTCATAATTTAGCTAAAGGCAATCCTTTGGCTTTAGAAGTTTTGGGTTCTCATTTTCATTCTAGAGATGAAGTATATTGGAAGAGTGAGCTTGACAAACTCAAAACTTGCCCCCATAGAGGAATTCAAGATATATTGAGGGTTAGTTATGATGGATTAGATGACATGGATAAGGAAATATTTTTAGACATTGCATTTTTTTTTGTGGGAGAAAAAAAGATAGCATTACTCAGGTGCTAG 1356 0.3813 MAASASSSQVKHDVFISFRGSDIRSGFLSHLKKELRRKQVDVYVDDRLERGDEISSALDEAIEGSMIALVIFSKEYASSKWCLQELVKIMERKETSQQIVIPIFYYVPPTDVRNQTGAYAESFNDHEQRFKDNMDKLKIWRSVLTKTANLSGHDSPNFQDESELIDAIVMDVLKKLKVDNHSVPTSQLVGSHENLGSVESLMEINESQEVRFIGIWGMGGIGKTTLAREIYNRFSSEFGSHCFLDKVREESTGITSLYGKLLYELFGEKDLHKNMNDAKRRLQRVKALIVLDDVDNPSQLKGAGQILINLGLGSRVIVTSRDKHVLRSGRIDEKYIHEVKGLKFDESLELFSSHAFDQSYPKVGYEELSKMIVHNLAKGNPLALEVLGSHFHSRDEVYWKSELDKLKTCPHRGIQDILRVSYDGLDDMDKEIFLDIAFFFVGEKKIALLRC 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g1446 451 PRINTS Disease resistance protein signature 212 227 - -
Prci12g1446 451 PRINTS Disease resistance protein signature 281 295 - -
Prci12g1446 451 PRINTS Disease resistance protein signature 377 391 - -
Prci12g1446 451 Gene3D - 342 426 IPR042197 -
Prci12g1446 451 Pfam TIR domain 11 182 IPR000157 GO:0007165
Prci12g1446 451 FunFam Disease resistance protein (TIR-NBS-LRR class) 8 178 - -
Prci12g1446 451 Gene3D - 8 173 IPR035897 -
Prci12g1446 451 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 152 IPR035897 -
Prci12g1446 451 Coils Coil 268 288 - -
Prci12g1446 451 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 443 IPR044974 GO:0006952
Prci12g1446 451 Pfam NB-ARC domain 199 423 IPR002182 GO:0043531
Prci12g1446 451 SMART till_3 11 150 IPR000157 GO:0007165
Prci12g1446 451 ProSiteProfiles TIR domain profile. 10 176 IPR000157 GO:0007165
Prci12g1446 451 Gene3D - 174 336 IPR027417 -
Prci12g1446 451 SMART AAA_5 209 337 IPR003593 GO:0016887
Prci12g1446 451 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 436 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g1446 Prci-Chr12 30956344 30963290 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g1446 7 449 WRKY Transcription Factor Family AT4G12020 30.905 6.73e-41 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g1446 - - pcin:129287860 576.63