Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g1425 ATGGTGAGAGGGAAGATACAGATGAAGCGTATAGAGAACAAATCAAGCAGACAAGTAACATTCTCAAAGAGGCGTAATGGACTCTTAAAGAAAGCTTTTGAACTCTCAGTTCTGTGTGAAGTTGAGGTTGCTCTCATCATCTTCTCTTCCAGAGGAAAACTCCATGAATTTTCAAGTTCCAGCGTTCAGAAGACAATGGAACGCTACCGCAATTATGTTAGAGATTCTCAAACAGCCAACACATGCTTAGGACAAAATATGGAGGTTATTAATTATTATTTCCTTATATATAGAAATGATGTCTAA 306 0.3725 MVRGKIQMKRIENKSSRQVTFSKRRNGLLKKAFELSVLCEVEVALIIFSSRGKLHEFSSSSVQKTMERYRNYVRDSQTANTCLGQNMEVINYYFLIYRNDV 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g1425 101 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci12g1425 101 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Prci12g1425 101 SUPERFAMILY SRF-like 3 79 IPR036879 GO:0003677|GO:0046983
Prci12g1425 101 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Prci12g1425 101 FunFam MADS-box transcription factor 1 13 83 - -
Prci12g1425 101 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Prci12g1425 101 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 78 - -
Prci12g1425 101 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci12g1425 101 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci12g1425 101 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci12g1425 101 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci12g1425 101 Gene3D - 13 89 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g1425 Prci-Chr12 30446661 30453341 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g1425 1 80 MADS-box Gene Family AT5G62165 72.500 8.35e-40 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Prci12g1425 SRF-TF 1.9e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g1425 - - dcr:108209100 132.494