Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g1423 ATGGTGAGAAGGAAGATACAGATGAAGCGTATAGAGAACAAATCAAGCAGGCAAGTAACGTTCTCAAAGAGGCGCAATGGAATGTTAAAGAAAGCTTTTGAACTCTCAGTTCTGTGTGAAGTTGAGGTTGCTCTCATCATCTTCTCTTCCAGAGGAAAACTCTATGAATTTTCAAGTTCCAGCGTGCAGGAGACAATTGAACGCTACCGCAATTATGTTAGAGATTCTCAAAAAGCCAACCCATACTTGGGACAAAATATGGAGCATCTAAAGCAACAAACAGCAAGCATGAAGAAGATGATTGATGGCCTTGAAGCTTCAAAACGGAAACTCTCAGGAGAAAATTTGAACTCATGTTCCCTACAAGAGCTGCAAGAGTTAGAAGAACAGCTGCGTAAGAGTGTAAAAAAAGTTCAAGAAAGGAAGAATCAGGTGTTTAAGGAGAAAATGGAGAAACTTAAAGAAAAGGGAAAAGCCCAAACAGACGAAAATGCAAGGCTCTCTGTGAAGACATTGATTTTGGTGTGTGCAGTTGGCATCGATGAGAAAGCAAGCAAGACAGATAAATTTGAGTGA 576 0.401 MVRRKIQMKRIENKSSRQVTFSKRRNGMLKKAFELSVLCEVEVALIIFSSRGKLYEFSSSSVQETIERYRNYVRDSQKANPYLGQNMEHLKQQTASMKKMIDGLEASKRKLSGENLNSCSLQELQELEEQLRKSVKKVQERKNQVFKEKMEKLKEKGKAQTDENARLSVKTLILVCAVGIDEKASKTDKFE 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g1423 191 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci12g1423 191 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Prci12g1423 191 Gene3D - 13 110 IPR036879 GO:0003677|GO:0046983
Prci12g1423 191 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 155 - -
Prci12g1423 191 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci12g1423 191 CDD MADS_MEF2_like 3 77 IPR033896 GO:0000977|GO:0045944
Prci12g1423 191 Coils Coil 87 107 - -
Prci12g1423 191 SUPERFAMILY SRF-like 3 78 IPR036879 GO:0003677|GO:0046983
Prci12g1423 191 Coils Coil 117 170 - -
Prci12g1423 191 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Prci12g1423 191 Pfam K-box region 87 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci12g1423 191 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci12g1423 191 FunFam MADS-box transcription factor 1 13 83 - -
Prci12g1423 191 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci12g1423 191 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci12g1423 191 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g1423 Prci-Chr12 30416566 30425161 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g1423 1 158 MADS-box Gene Family AT2G45660 62.658 5.58e-67 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci12g1423 K-box 6.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g1423 - - jre:108990767 202.216