Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g1421 ATGGTGAGAAGGAAGATACAGATGAAGCGTATAGAGAACAAATCAAGCAGGCAAGTAACGTTCTCAAAGAGGCGCAATGGAATGTTAAAGAAAGCTTTTGAACTCTCAGTTCTGTGTGAAGTTGAGGTTGCTCTCATCATCTTCTCTTCCAGAGGAAAACTCTATGAATTTTCAAGTTCCAGCGTGCAGGAGACAATTGAACGCTACCGCAATTATGTTAGAGATTCTCAAAAAGCCAACCCATACTTGGGACAAAATATGGAGCATCTAAAGCAACAAACAGCAAGCATGAAGAAGATGATTGATGGCCTTGAAGCTTCAAAACGGAAACTCTCAGGAGAAAATTTGAACTCATGTTCCCTACAAGAGCTGCAAGAGTTAGAAGAACAGCTGCGTAAGAGTGTAAAAAAAGTTCAAGAAAGGAAGAATCAGGTGTTTAAGGAGAAAATGGAGAAACTTAAAGAAAAGGGAAAAGCCCAAACAGACGAAAATGCAAGGCTCTCTGTGAAGTTGGCATCGATGAGAAAGCAAGCAAGACAGATAAATTTGAGTGAAAATCCAGCATCCACATCAGAAATTAATATTTCATCTCCGGATGTGGAGACTGATTTGTTCATCGGACTTCCAGAGAGAAGAACATGA 642 0.4003 MVRRKIQMKRIENKSSRQVTFSKRRNGMLKKAFELSVLCEVEVALIIFSSRGKLYEFSSSSVQETIERYRNYVRDSQKANPYLGQNMEHLKQQTASMKKMIDGLEASKRKLSGENLNSCSLQELQELEEQLRKSVKKVQERKNQVFKEKMEKLKEKGKAQTDENARLSVKLASMRKQARQINLSENPASTSEINISSPDVETDLFIGLPERRT 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g1421 213 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci12g1421 213 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci12g1421 213 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Prci12g1421 213 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci12g1421 213 Gene3D - 13 110 IPR036879 GO:0003677|GO:0046983
Prci12g1421 213 CDD MADS_MEF2_like 3 77 IPR033896 GO:0000977|GO:0045944
Prci12g1421 213 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Prci12g1421 213 Pfam K-box region 86 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci12g1421 213 Coils Coil 87 107 - -
Prci12g1421 213 Coils Coil 117 170 - -
Prci12g1421 213 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci12g1421 213 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci12g1421 213 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci12g1421 213 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 165 - -
Prci12g1421 213 SUPERFAMILY SRF-like 3 78 IPR036879 GO:0003677|GO:0046983
Prci12g1421 213 FunFam MADS-box transcription factor 1 13 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g1421 Prci-Chr12 30416566 30425330 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g1421 1 158 MADS-box Gene Family AT2G45660 62.658 1.03e-66 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci12g1421 K-box 4.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g1421 - - jre:109013897 220.32