Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g1420 ATGGTGAGAGGGAAGACACAGATGAATCGTATAGAGAACGCGACAAGCAGACAAGTAACATTCTCAAAGAGACGAAATGGACTCTTAAAGAAAGCTTTTGAGCTCTCAGTTCTTTGTGATGCTGAGATTGCTCTCATCATCTTCTCCCCAAGAGGCAAACTCTATGAATTTGCAAGCTCCAGTATGCAGGCAACAATTGAACGGTACCGCAATCATAACCGAGATGCTCAAACATGCACCAGATTCTGTGAACAAAATATGCAGCATCTAAAGCAAGAAACAGAGACTATGATGAAGAAGATTGAGCAGCTTGAAATTTCAAAACGGAAACTCTTGGGAGAAGATTTCGGCTCATGCTCAATAAAAGAACTAGAAGATATAGAGCAGCAGTTGGAAAGAAGTGTCAAAAACATTCGTGAGAGGAAGATTCAAGTTTTCAAAGAACAAGTGGAGCAACTAAAAGAAAAGGGAAAAGCCCTAGCAGCAGAAAATGCAAGGCTCGCTGAAAAGCATGATACCCTGGAAAAGCAAGCCAGGAATAAGAATCATGGTGAGAAGCCAGCTTCCTTAGAAAATAGTCCAACTTCAGAAGTAGAAACTGCCTTGTTCATTGGATTACCAGAAACGAGAGGCATTGCTCTTCCTCAATATGTGGTCTGA 660 0.4136 MVRGKTQMNRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEIALIIFSPRGKLYEFASSSMQATIERYRNHNRDAQTCTRFCEQNMQHLKQETETMMKKIEQLEISKRKLLGEDFGSCSIKELEDIEQQLERSVKNIRERKIQVFKEQVEQLKEKGKALAAENARLAEKHDTLEKQARNKNHGEKPASLENSPTSEVETALFIGLPETRGIALPQYVV 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g1420 219 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Prci12g1420 219 Gene3D - 14 95 IPR036879 GO:0003677|GO:0046983
Prci12g1420 219 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Prci12g1420 219 SUPERFAMILY SRF-like 3 75 IPR036879 GO:0003677|GO:0046983
Prci12g1420 219 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci12g1420 219 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci12g1420 219 Pfam K-box region 85 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci12g1420 219 MobiDBLite consensus disorder prediction 168 196 - -
Prci12g1420 219 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci12g1420 219 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci12g1420 219 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci12g1420 219 MobiDBLite consensus disorder prediction 168 186 - -
Prci12g1420 219 Coils Coil 87 107 - -
Prci12g1420 219 FunFam MADS-box protein SOC1 14 95 - -
Prci12g1420 219 Coils Coil 121 177 - -
Prci12g1420 219 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Prci12g1420 219 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 177 - -
Prci12g1420 219 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g1420 Prci-Chr12 30396819 30411683 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g1420 1 158 MADS-box Gene Family AT2G45660 75.949 3.61e-82 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci12g1420 K-box 6.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g1420 - - gmx:100037477 293.123