Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g1417 ATGGTGAGAGGGAAGATGGAGATGAAGCGTATAGAGAACGCGACGAACAGGCAGGTGACATTCTCAAAGAGGCGAAATGGACTGTTAAAGAAGGCCTTTGAGCTCTCAGTTCTGTGTGATGCTGAGGTTGGTCTCATCATCTTCTCCCCCAGAGGCAAGCTGTACGAATTTTCAAGCTCCAGCTTGCAAGAGACAATTGAACGGTATCGTAGTTATACGAGAGATGCTCAGACAGCCACCAGATACATGGAACAAAACATGCAGCTTTTAAAGGAAGAAACAGAAAGTATGATGGAGAAGGTTCAACTTCTTGAAGTTTCAAAACGGAAATTCTCGGGAGAAGAGCTAGGCTCATGCTCGCTTCAAGAACTAGAAGAGATACAAGTGCAGTTGCAAAAGAGTGTAAGCAACGTTCGAGAAACAAAGGTTCGGACTTTTTTAGAACAAATGGAGCGACTAAGAGAAAATGAACGAACTCTTACAGCAGAAAACGCAAGGCTCTGTGAAAAGTATGGTATCGAGCTGTATCATCAGACAACAACAGAGAATAAAAGCGAAAATCCAACCTTCTCAGAAAATATTCCAACTTTAGATGTGGAAACTAACTTGTTCATTGGACTCCCAGAATCAAGAACAACATGCATTCCTCATAACACTGCTGAGGTCTAA 669 0.4245 MVRGKMEMKRIENATNRQVTFSKRRNGLLKKAFELSVLCDAEVGLIIFSPRGKLYEFSSSSLQETIERYRSYTRDAQTATRYMEQNMQLLKEETESMMEKVQLLEVSKRKFSGEELGSCSLQELEEIQVQLQKSVSNVRETKVRTFLEQMERLRENERTLTAENARLCEKYGIELYHQTTTENKSENPTFSENIPTLDVETNLFIGLPESRTTCIPHNTAEV 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g1417 222 Coils Coil 121 141 - -
Prci12g1417 222 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Prci12g1417 222 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Prci12g1417 222 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Prci12g1417 222 ProSiteProfiles K-box domain profile. 87 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci12g1417 222 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci12g1417 222 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Prci12g1417 222 Coils Coil 143 170 - -
Prci12g1417 222 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 166 - -
Prci12g1417 222 SUPERFAMILY SRF-like 3 79 IPR036879 GO:0003677|GO:0046983
Prci12g1417 222 Gene3D - 13 103 IPR036879 GO:0003677|GO:0046983
Prci12g1417 222 Pfam K-box region 84 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci12g1417 222 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci12g1417 222 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci12g1417 222 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci12g1417 222 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g1417 Prci-Chr12 30275513 30281663 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g1417 1 155 MADS-box Gene Family AT2G45660 62.581 7.42e-66 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci12g1417 K-box 7.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g1417 - - gmx:100037477 265.003