Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g1416 ATGGTGAGAGGGAAGATGGAGATGAAGCGTATAGAGAACGCGACGAACAGGCAGGTGACATTCTCAAAGAGGCGAAATGGACTGTTAAAGAAGGCCTTTGAGCTCTCAGTTCTGTGTGATGCTGAGGTTGGTCTCATCATCTTCTCCCCCAGAGGCAAGCTGTACGAATTTTCAAGCTCCAGCTTGCAAGAGACAATTGAACGGTATCGTAGTTATACGAGAGATGCTCAGACAGCCACCAGATACATGGAACAAAACATGCAGCTTTTAAAGGAAGAAACAGAAAGTATGATGGAGAAGGTTCAACTTCTTGAAGTTTCAAAACGGAAATTCTCGGGAGAAGAGCTAGGCTCATGCTCGCTTCAAGAACTAGAAGAGATACAAGTGCAGTTGCAAAAGAGTGTTCGGACTTTTTTAGAACAAATGGAGCGACTAAGAGAAAATGAACGAACTCTTACAGCAGAAAACGCAAGGCTCTGTGAAAAGTATGGTATCGAGCTGTATCATCAGACAACAACAGAGAATAAAAGCGAAAATCCAACCTTCTCAGAAAATATTCCAACTTTAGATGTGGAAACTAACTTGTTCATTGGACTCCCAGAATCAAGAACAACATGCATTCCTCATAACACTGCTGAGGTCTAA 645 0.4248 MVRGKMEMKRIENATNRQVTFSKRRNGLLKKAFELSVLCDAEVGLIIFSPRGKLYEFSSSSLQETIERYRSYTRDAQTATRYMEQNMQLLKEETESMMEKVQLLEVSKRKFSGEELGSCSLQELEEIQVQLQKSVRTFLEQMERLRENERTLTAENARLCEKYGIELYHQTTTENKSENPTFSENIPTLDVETNLFIGLPESRTTCIPHNTAEV 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g1416 214 FunFam MADS-box transcription factor MADS-MC 13 87 - -
Prci12g1416 214 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Prci12g1416 214 Coils Coil 121 162 - -
Prci12g1416 214 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Prci12g1416 214 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci12g1416 214 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci12g1416 214 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci12g1416 214 Pfam K-box region 84 163 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci12g1416 214 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Prci12g1416 214 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 165 - -
Prci12g1416 214 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci12g1416 214 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Prci12g1416 214 SUPERFAMILY SRF-like 3 79 IPR036879 GO:0003677|GO:0046983
Prci12g1416 214 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g1416 Prci-Chr12 30275513 30281663 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g1416 1 147 MADS-box Gene Family AT2G45660 61.290 2.78e-62 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci12g1416 K-box 2.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g1416 - - gmx:100037477 250.366