Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g1415 ATGGTGAGAGGGAAGATGGAGATGAAGCGTATAGAGAACGCGACGAACAGGCAGGTGACATTCTCAAAGAGGCGAAATGGACTGTTAAAGAAGGCCTTTGAGCTCTCAGTTCTGTGTGATGCTGAGGTTGGTCTCATCATCTTCTCCCCCAGAGGCAAGCTGTACGAATTTTCAAGCTCCAGCTTGCAAGAGACAATTGAACGGTATCGTAGTTATACGAGAGATGCTCAGACAGCCACCAGATACATGGAACAAAACATGCAGCTTTTAAAGGAAGAAACAGAAAGTATGATGGAGAAGGTTCAACTTCTTGAAGTTTCAAAACGGAAATTCTCGGGAGAAGAGCTAGGCTCATGCTCGCTTCAAGAACTAGAAGAGATACAAGTGCAGTTGCAAAAGAGTGAACGAACTCTTACAGCAGAAAACGCAAGGCTCTGTGAAAAGTATGGTATCGAGCTGTATCATCAGACAACAACAGAGAATAAAAGCGAAAATCCAACCTTCTCAGAAAATATTCCAACTTTAGATGTGGAAACTAACTTGTTCATTGGACTCCCAGAATCAAGAACAACATGCATTCCTCATAACACTGCTGAGGTCTAA 603 0.4295 MVRGKMEMKRIENATNRQVTFSKRRNGLLKKAFELSVLCDAEVGLIIFSPRGKLYEFSSSSLQETIERYRSYTRDAQTATRYMEQNMQLLKEETESMMEKVQLLEVSKRKFSGEELGSCSLQELEEIQVQLQKSERTLTAENARLCEKYGIELYHQTTTENKSENPTFSENIPTLDVETNLFIGLPESRTTCIPHNTAEV 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g1415 200 SUPERFAMILY SRF-like 3 79 IPR036879 GO:0003677|GO:0046983
Prci12g1415 200 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci12g1415 200 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci12g1415 200 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci12g1415 200 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Prci12g1415 200 Gene3D - 13 110 IPR036879 GO:0003677|GO:0046983
Prci12g1415 200 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Prci12g1415 200 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 141 - -
Prci12g1415 200 FunFam MADS-box transcription factor MADS-MC 13 87 - -
Prci12g1415 200 Coils Coil 121 144 - -
Prci12g1415 200 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci12g1415 200 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Prci12g1415 200 Pfam K-box region 84 138 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci12g1415 200 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g1415 Prci-Chr12 30275513 30281663 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g1415 1 140 MADS-box Gene Family AT2G45660 64.286 9.74e-61 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci12g1415 K-box 3.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g1415 - - gmx:100037477 233.032