Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g1413 ATGGTGAGACGGAAGATAGCGATGAAGCTTATAGAGAACAAAGCAAGCAGGCAAGTGACATTCTCAAGAAGGCGAAATGGACTGTTAAAGAAGGCTTTTGAGCTCTCAGTTCTGTGTGATGCTGAGGTTGGTCTCATCATCTTCTCTCCCACAGGCTTGCTCTATGAATTTTCAAGCTCCAGCTGGCATGAGACAATTGAACGGTATCGAAGTTATGCCAGAGATGCTGAGACAGCCACTAGATTCCTGGAACACAATATGAAGGAAGAAACAGATAGGAAGATGGAGAAGGTTGAGCTTCTTGAAGCTTCAAAACGGAAACTCATGGGAGAAGGATTGGGATCATGCTCCTTTGATGAACTACTAGAAATACAGCAACAGTTGGAAAGGAGTGTGATAAATGTTCAAGCAAGAAAGATTAAGGCTTTTACGGAACAAAAGGAGCGACTAAAAGACAAGGGAAAAGCCCTAGAAGCAGAAAACGCAAGGCTCTGTCAGAAGTATGGTATAGAGCCATGTCAAGTGACAGGGAAAGCTAGTGAAAATCTAGCATCCTTAAATGTGGAAACTGATTTGTTCACTGGACTCCCACAAACAAGCACAAGAGACAATATTCCACATCCTTGA 627 0.429 MVRRKIAMKLIENKASRQVTFSRRRNGLLKKAFELSVLCDAEVGLIIFSPTGLLYEFSSSSWHETIERYRSYARDAETATRFLEHNMKEETDRKMEKVELLEASKRKLMGEGLGSCSFDELLEIQQQLERSVINVQARKIKAFTEQKERLKDKGKALEAENARLCQKYGIEPCQVTGKASENLASLNVETDLFTGLPQTSTRDNIPHP 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g1413 208 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci12g1413 208 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 155 - -
Prci12g1413 208 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Prci12g1413 208 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Prci12g1413 208 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Prci12g1413 208 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci12g1413 208 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci12g1413 208 Pfam K-box region 84 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci12g1413 208 Gene3D - 13 107 IPR036879 GO:0003677|GO:0046983
Prci12g1413 208 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci12g1413 208 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci12g1413 208 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci12g1413 208 SUPERFAMILY SRF-like 3 73 IPR036879 GO:0003677|GO:0046983
Prci12g1413 208 Coils Coil 133 167 - -
Prci12g1413 208 FunFam Agamous-like MADS-box protein AGL13 13 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g1413 Prci-Chr12 30105483 30131955 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g1413 1 155 MADS-box Gene Family AT2G45660 60.759 5.93e-59 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci12g1413 K-box 1.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g1413 - - gmx:100037477 236.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci12g1413 12 30105483 30131955 Prci12g1413 12 30105483 30131955 ECH