Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g1353 ATGGCCTCTAATGTTCAAAGAAATGGCGCTCAAAGGGGGCCTAAGCTCGATCGGTTTGCGGGTGCGAAGATGTCGTTCAGACCAAGGGTTCCTCCTTCATCGCAGTCTCCGGGATCCGCTCTCCGCCGGAGTAGCCCGGCCTCTTTGGCAGCTAGAAACGGTGACGGAGTACCTGGAAGAGTTCGAGTGGCTGTAAGATTGAGACCTCGAAATGCTGAAGAAATGATGGCGGATGCTGATTTTGCTGACTGCGTTGAATTGCAACCTGAGTTTAAAAGGTTGAAACTTCGGAAGAACAATTGGGATTCAGACACATATGAGTTTGATGAAGTATTTACTGAATTTGCATCACAGAAGCGTGTCTATGAAGTTGTTGCTAAGCCAGTAGTGGAGAGTGTTCTTGATGGATATAATGGGACGGTAATGGCTTATGGCCAAACAGGCACGGGGAAAACTTTTACCGTTGGACAATTGGGGGAAGATGACATTTCCAATCGTGGCATCATGGTTCGTTCCATGGAGGATATTTTAGCAGATCTATCTCCAGAAACTGATACTGTCACTGTCTCGTACTTGCAGCTTTACATGGAGACTATCCAGGACTTGCTTAACCCTGCGAATGATAACATTCCTATTATGGAAGATCCAAGAACTGGTGATGTATCTCTGCCTGGGGCTACGATTGTAGAAATTAGAGACCAACAGAGTTTTTTGGAGCTGCTGAGAGTGGGGGAAGCTCACCGTTTTGCTGCCAACACAAAGTTGAATACTGAATCTTCTCGTAGTCATGCTATATTGATGGTACATGTTAAGAGGTCTGTCTTAGAAAGTGAAGATATTTCTTCTAATGAAAATAATGACTCATCTCATTTGACCAAACCTTCTAAACCACTTGTTCGAAAGAGCAAGCTAGTTGTGGTAGATTTGGCAGGCTCAGAGCGTATCCAAAAGTCAGGGAGTGAAGGACAAATGCTAGAGGAAGCTAAATCTATAAATCTTTCACTTAGTGCATTGGGAAAATGTATTAATGCTCTGGCAGAGAACAGTGCTCATGTTCCAATTCGTGATTCCAAGCTTACCAGGTTGCTCAGAGATTCTTTTGGAGGTACTGCTAGGACTTCTTTGATTGTAACTATTGGACCATCTCCACGTCATCGAGGAGAGACTGCAAGTACCATACTGTTTGGCCAGAGGGCAATGAAAGTTGAGAATATGTTGAAAATAAAGGAGGAATTTGATTATAAAAGTTTGGCCCGGAGGTTTGAAGTACAAGTCGATAAGTTGATTGCGGAAAATGAAAGGCAGCAAAAAGCTTTTGAGGCTGAAGTTGAAAAAATAAATTTGGAGGCCCAAAGTCATATAGCTGAAGTTGAGAGGAATTTTGCAGATGCATTGGAGAAAGAGAGGATGAAATGCCAGTTGGAGTACATGGATTCAGTCAAGCAGTTGGAGCATAAGTTGGTGTTGAGTCAAGAAAGATATGACTGCAATGGCTTTGTGGATGCTCATGGAGAGGGGCCCGGGCCATCATCCACAGATGAAGTTGCTGAGGTCAAAAGGTTGCTTGATAATGAAACTAATCGTAGAAAGGCAGCTGAAGAAGAGGTAGAACACCTAAGAAGTCAGCTGGGGAAACATTCACAGACACAGGCTGGAGGCAATCTGGAGATTCTAAATCTTCGCCAAATGCTGGAAGAGGAGGCTCATCAGAAAAGGAAACTTGAAGAAGAGTTAATAATACTGCAAAGCCAATTATTACAAGTGAATTATGAAGCTGATCAGATGAGAAGGTGTTTGGAAAATGGGGGCTCCGAAAATGCATTTTCTGCCATGGATTCCGCCATGTCTCAAGCTAGGAATTCTCAACTCAGAGACAATGGGAATGGTCAGAAGGCATCTGTTGCTACCCTTTTTGAACAAGTTGGATTGCACAAGATATTGACATTACTAGAGTCAGACGATGCCAATGTACGGATTCATGCAGTGAAAGTGGTTGCCAACCTAGCTGCTGAAGAAGCAAATCAAAAAAGAATTGTAGATGCAGGTGGTCTTACATCCTTGCTTATGCTTCTTAGAAGATATGAGGATGAAACTGTTCGCAGGGTAGCTGCAGGGGCCATAGCCAATCTTGCGATGAATGAAGCCAATCAAGAACTTATTATGGCTGAAGGTGGAATTACTCTCTTATCAATGACTTCATCTGATGCTGAAGATCCACAAACTCTCCGAATGGTAGCTGGAGCTATTGCTAATCTATGTGGAAATGAGAAGTTATTAATGAAGCTGAGATCTCAGGGTGGTATAAAGGCTTTACTGGGAATTGTTAGGTGTGGACATCCTGATGTTCTTTCCCAAGTTGCTCGAGGAATTGCCAACTTTGCAAAATGCGAGTCCCGAGCTTCTGGTCAAGGGTTAAAAAGTGGCAGATCCTTTTTAGTAGAAGATGGCGCACTGCCATGGATTGTACAAAATGCTAATAATGAAGCTGCACCGATAAGGCGCCACGTTGAGCTTGCAATCTGCCACTTGGCACAGCATGAAGTGAATGCAAAAGACATGATTAGTGGTGGTGCCCTTTGGGAGCTTGTCCGGATTTCAAGGGATTGTTCACGGGAGGACATAAGGAATCTTGCCCGTCGAACTCTAAACAACAGCCCCACCTTCAAATCTGAACTGAGACGGCTAAGGATTGAATATTGA 2700 0.437 MASNVQRNGAQRGPKLDRFAGAKMSFRPRVPPSSQSPGSALRRSSPASLAARNGDGVPGRVRVAVRLRPRNAEEMMADADFADCVELQPEFKRLKLRKNNWDSDTYEFDEVFTEFASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTFTVGQLGEDDISNRGIMVRSMEDILADLSPETDTVTVSYLQLYMETIQDLLNPANDNIPIMEDPRTGDVSLPGATIVEIRDQQSFLELLRVGEAHRFAANTKLNTESSRSHAILMVHVKRSVLESEDISSNENNDSSHLTKPSKPLVRKSKLVVVDLAGSERIQKSGSEGQMLEEAKSINLSLSALGKCINALAENSAHVPIRDSKLTRLLRDSFGGTARTSLIVTIGPSPRHRGETASTILFGQRAMKVENMLKIKEEFDYKSLARRFEVQVDKLIAENERQQKAFEAEVEKINLEAQSHIAEVERNFADALEKERMKCQLEYMDSVKQLEHKLVLSQERYDCNGFVDAHGEGPGPSSTDEVAEVKRLLDNETNRRKAAEEEVEHLRSQLGKHSQTQAGGNLEILNLRQMLEEEAHQKRKLEEELIILQSQLLQVNYEADQMRRCLENGGSENAFSAMDSAMSQARNSQLRDNGNGQKASVATLFEQVGLHKILTLLESDDANVRIHAVKVVANLAAEEANQKRIVDAGGLTSLLMLLRRYEDETVRRVAAGAIANLAMNEANQELIMAEGGITLLSMTSSDAEDPQTLRMVAGAIANLCGNEKLLMKLRSQGGIKALLGIVRCGHPDVLSQVARGIANFAKCESRASGQGLKSGRSFLVEDGALPWIVQNANNEAAPIRRHVELAICHLAQHEVNAKDMISGGALWELVRISRDCSREDIRNLARRTLNNSPTFKSELRRLRIEY 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g1353 899 SMART arm_5 671 712 IPR000225 GO:0005515
Prci12g1353 899 SMART arm_5 631 670 IPR000225 GO:0005515
Prci12g1353 899 SMART arm_5 713 754 IPR000225 GO:0005515
Prci12g1353 899 SMART arm_5 755 795 IPR000225 GO:0005515
Prci12g1353 899 Pfam Kinesin motor domain 66 402 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Prci12g1353 899 PANTHER CENTROMERE PROTEIN E 60 619 IPR027640 GO:0003777|GO:0007018
Prci12g1353 899 MobiDBLite consensus disorder prediction 29 43 - -
Prci12g1353 899 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 641 683 IPR000225 GO:0005515
Prci12g1353 899 SUPERFAMILY ARM repeat 632 884 IPR016024 -
Prci12g1353 899 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 682 725 IPR000225 GO:0005515
Prci12g1353 899 ProSitePatterns Kinesin motor domain signature. 302 313 IPR019821 GO:0003777|GO:0005524|GO:0007018
Prci12g1353 899 PRINTS Kinesin heavy chain signature 352 373 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Prci12g1353 899 PRINTS Kinesin heavy chain signature 136 157 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Prci12g1353 899 PRINTS Kinesin heavy chain signature 303 321 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Prci12g1353 899 Pfam Armadillo/beta-catenin-like repeat 674 711 IPR000225 GO:0005515
Prci12g1353 899 CDD KISc 60 400 - -
Prci12g1353 899 Gene3D - 801 889 IPR011989 -
Prci12g1353 899 ProSiteProfiles Kinesin motor domain profile. 60 402 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Prci12g1353 899 Coils Coil 557 591 - -
Prci12g1353 899 SMART kinesin_4 58 410 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Prci12g1353 899 FunFam Kinesin-like protein 611 887 - -
Prci12g1353 899 Coils Coil 515 549 - -
Prci12g1353 899 FunFam Kinesin-like protein 52 432 - -
Prci12g1353 899 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 438 IPR027417 -
Prci12g1353 899 MobiDBLite consensus disorder prediction 1 55 - -
Prci12g1353 899 Gene3D - 612 800 IPR011989 -
Prci12g1353 899 Gene3D Kinesin motor domain 55 432 IPR036961 -
Prci12g1353 899 Coils Coil 418 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g1353 Prci-Chr12 27768614 27791337 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g1353 55 404 Calmodulin-binding Proteins AT5G65930 34.605 1.25e-46 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g1353 K10396 - gmx:100789455 1425.99