Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g1281 ATGGGGCGCATGCACAGTCGCGGTAAGGGTATTTCCGCTTCGGCTCTTCCCTATAAGAGAACCCCACCTAGCTGGTTGAAGATCTCTGCTCAGGATGTTGAGGAGAACATTTGCAAGTTTGCCAAGAAGGGTCTAACGCCATCTCAAATTGGTGTTATTCTTCGGGACTCTCACGGTATTGCTCAGGTGAAAAGTGTGACTGGGAACAAGATTTTGCGGATACTGAAGGCCCATGGTCTTGCTCCTGAAATACCAGAAGACCTGTACCACCTGATTAAGAAAGCTGTTTCAATTAGAAAGCATTTAGAGAGGAACAGAAAGGATAAAGATTCTAAATTTAGGTTGATCTTGGTTGAGAGCAGGATCCATCGCCTTGCTCGTTACTACAAGAAGACAAAGAAGCTTCCTCCTGTCTGGAAATATGAATCTACAACTGCTAGCACTCTTGTTGCTTAG 456 0.4496 MGRMHSRGKGISASALPYKRTPPSWLKISAQDVEENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g1281 151 Gene3D - 35 82 - -
Prci12g1281 151 Pfam Ribosomal protein S15 74 145 IPR000589 GO:0003735|GO:0005840|GO:0006412
Prci12g1281 151 PANTHER RIBOSOMAL PROTEIN S15P/S13E 1 151 IPR023029 -
Prci12g1281 151 SMART Ribosomal_S13_N_2 1 60 IPR012606 GO:0003735|GO:0005840|GO:0006412
Prci12g1281 151 ProSitePatterns Ribosomal protein S15 signature. 98 128 IPR000589 GO:0003735|GO:0005840|GO:0006412
Prci12g1281 151 FunFam 40S ribosomal protein S13 35 82 - -
Prci12g1281 151 SMART Ribosomal_S15_2 70 149 IPR000589 GO:0003735|GO:0005840|GO:0006412
Prci12g1281 151 Pfam Ribosomal S13/S15 N-terminal domain 1 60 IPR012606 GO:0003735|GO:0005840|GO:0006412
Prci12g1281 151 Gene3D - 83 151 - -
Prci12g1281 151 FunFam 40S ribosomal protein S13 83 151 - -
Prci12g1281 151 Hamap 30S ribosomal protein S15 [rpsO]. 3 149 IPR023029 -
Prci12g1281 151 CDD Ribosomal_S15p_S13e 70 143 IPR000589 GO:0003735|GO:0005840|GO:0006412
Prci12g1281 151 SUPERFAMILY S15/NS1 RNA-binding domain 66 142 IPR009068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g1281 Prci-Chr12 26638554 26641413 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g1281 1 151 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 93.377 4.64e-103 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g1281 K02953 - twl:119982067 300.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci12g1281 12 26638554 26641413 Prci12g1281 12 26638554 26641413 ECH