Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g1279 ATGTCCTTCTGTGCTGGATTTGTGTTTGGAACCGTATTTGCAGCTATCATTGGATTAGGCAGGATTATATTTAGAAAGGCTTTGGTCAAGAAAATAAAACGAGGAGAAGGAACGCAGGCGAAGAAGAAGCATGGAGATTTCACTTCAATGTGGAATTTTGATGGTCATATTGCCTTTGAAGATATCATTAAAGCAACAGACGATTTTGATATCAAATACTTTATAGGAAAAGGTGCTTCTGGGGAGGTTTACAAGGCAAAACTTCCCAGCGGAAAAATTGTTGCAGTGAAGAAACTTCGACGCATGATATCTGAAAATCAATCATCATTTCAAAAGAGTTTTTACAACGAGATCGAGGTTTTATCGGAGATTCGTCATCGAAACATTGTCAAACTTCATGGGTTCTGTTCCGATATAAAGTGCTTGTTTCTGGTTTATGCATTTATGGAAAGTGGTAGCCTGTTACATGCGTTGAAGAATGATGAAAAGGCTCAAAAGTTAAGTTGGAGCAAGAGATTCAATATTGTTAATGGGATAGCTCACGCTGTGAAATACATGCATCACGATTGTCTTCCACCAATTGTTCATCGAGACATAACAAGTAGCAATGTCTTGTTGAACTCAGATATGGAAGCATTTCTATCAGACTTTGGCATCGCTAGGCTGCTCGATCCACATTCATCAAACCATTGTGTATTAGCTGGTACTTGTGGTTACGTTGCTCCAGAGTTAGCATACACGTTAAAAGTGACCGAAAAGTGCGATGTCTATGGCTTTGGAGTAGTTGCATTAGAAACTATGACAGGAAAGTATTGTGGAGAGTTAATTTCATGTCTGGCAAAGGATTCTACTGATGAAAAGATAATGCTAAAAGATATCTTAGATACACGAATCCCTCAGCCTCGTACTCGAAAAGATATTTGGGATGTAATTCTTGTGATGACCATTATATTAGCATGTCTATGTCCTGACCCAGATTGTCGGCCATCAATGGAGCAAGTGACTCAGAAACTTTCACTTTCTAGGCCACTTTTCACACCTCCCTTCAATGATATTTCAATTCATCACTTAAGGAGTCAAGCCATAATTTCATGTAATAGCTGA 1104 0.3868 MSFCAGFVFGTVFAAIIGLGRIIFRKALVKKIKRGEGTQAKKKHGDFTSMWNFDGHIAFEDIIKATDDFDIKYFIGKGASGEVYKAKLPSGKIVAVKKLRRMISENQSSFQKSFYNEIEVLSEIRHRNIVKLHGFCSDIKCLFLVYAFMESGSLLHALKNDEKAQKLSWSKRFNIVNGIAHAVKYMHHDCLPPIVHRDITSSNVLLNSDMEAFLSDFGIARLLDPHSSNHCVLAGTCGYVAPELAYTLKVTEKCDVYGFGVVALETMTGKYCGELISCLAKDSTDEKIMLKDILDTRIPQPRTRKDIWDVILVMTIILACLCPDPDCRPSMEQVTQKLSLSRPLFTPPFNDISIHHLRSQAIISCNS 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g1279 367 PANTHER LEUCINE RICH REPEAT KINASE 2 26 340 - -
Prci12g1279 367 PIRSF ILK 22 343 - -
Prci12g1279 367 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
Prci12g1279 367 ProSiteProfiles Protein kinase domain profile. 69 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci12g1279 367 ProSitePatterns Tyrosine protein kinases specific active-site signature. 194 206 IPR008266 GO:0004672|GO:0006468
Prci12g1279 367 SUPERFAMILY Protein kinase-like (PK-like) 51 338 IPR011009 -
Prci12g1279 367 Gene3D Phosphorylase Kinase; domain 1 34 148 - -
Prci12g1279 367 Pfam Protein kinase domain 72 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci12g1279 367 Gene3D Transferase(Phosphotransferase) domain 1 149 343 - -
Prci12g1279 367 FunFam Leucine-rich repeat receptor-like protein kinase 149 345 - -
Prci12g1279 367 FunFam Leucine-rich repeat receptor protein kinase MSP1 30 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g1279 Prci-Chr12 26616981 26619118 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g1279 30 242 Receptor kinase-like Gene Family AT4G08850 53.953 5.47e-69 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Prci12g1279 Pkinase 2.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g1279 - - pcin:129289446 746.117