Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g1242 ATGAGCCCTACCATGGAGAATCATGGTCAATATGATGTTTCTCTTGATGCCATGTTGCTAGCGAGTGCTCAGCTTTACCCTGCAGTGTTAAATGCTGCCATTGAACTCGACCTCTTCAAGATCATTGGTGAGGGAAACCCTAAGGGCATGTCACCCTCTGAAATTGCTTCCAAGCTTCCAAATCCACACGCTGACACTGTTAGCCGTCTCGATCGGTTGCTGTGTTTGCTTGCTAGTCATTCTGTTTTGACTTGTTCTTCCAGGAAGGTTGATGAAGATAGTAGGATTGAGAGGCTTTATGCTCTATCTCCTGCTGGTAAATACATGTTCCCTGATGAGGATGGAGTCTCTTATGCTTCAGTCTCCAGATTAAGTTACCATCCAGCTTATATAAAAGTTCGGGAAAACATCAAGCAAGTGATACTTGACGAGGAAGAGGACCTGTTTAAGAAAGTTCACGGGATGTCCATGTTTGAATACATGAAAAAAGATCCGACCTTCGAAACTGTTTTCCATAAGGCAATGGCTGATCTTTCATTCATGCACATGAAACAAATCCTTGAGAACTACAAAGGATTTGAGGGAATATCAACACTTGTTGACGTTGCCGGCGGCGTTGGCCAAAGCCTCAAAATGATCGTCTCTAAGTATCCTTCAATTCGAGGCATTAACTTCGATTTGCCACATGTTGTTCAATATGCCCCATCCCACCCAGGAATCAAGCATGTCGGAGGAAGCATGTTCGAATGTGTCCCAGAAGGTGATGCTATAATGATCAAGGCTACAACTCATAACTGGGCAGATGACAAGTGCATACAAGTTCTAAAAAATTGTCACAAGTCCCTCAAGAAAGGAGGGAAGCTTATTGTGATTGACCTGATAATGCCAGAAACACTAAATGCAACAGACGGCGATAAATATGTAGCGATTCTTGACAACATCATGTTCTTGCAAGCCGGTGGGAAGGAAAGAACGGAGAAAGAATTGGAAGCGCTAGGCAAAGCTGCTGGGTTTTCCAGCTATCGTGTTGCTACTCGTGTTTTCTCTTCTGCTTTGGGAGTCATCGAGTTTTATAAATAA 1080 0.4343 MSPTMENHGQYDVSLDAMLLASAQLYPAVLNAAIELDLFKIIGEGNPKGMSPSEIASKLPNPHADTVSRLDRLLCLLASHSVLTCSSRKVDEDSRIERLYALSPAGKYMFPDEDGVSYASVSRLSYHPAYIKVRENIKQVILDEEEDLFKKVHGMSMFEYMKKDPTFETVFHKAMADLSFMHMKQILENYKGFEGISTLVDVAGGVGQSLKMIVSKYPSIRGINFDLPHVVQYAPSHPGIKHVGGSMFECVPEGDAIMIKATTHNWADDKCIQVLKNCHKSLKKGGKLIVIDLIMPETLNATDGDKYVAILDNIMFLQAGGKERTEKELEALGKAAGFSSYRVATRVFSSALGVIEFYK 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g1242 359 Gene3D - 2 109 IPR036388 -
Prci12g1242 359 CDD AdoMet_MTases 198 295 - -
Prci12g1242 359 Pfam O-methyltransferase domain 137 339 IPR001077 GO:0008171
Prci12g1242 359 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 18 359 IPR016461 GO:0008168
Prci12g1242 359 PANTHER O-METHYLTRANSFERASE 17 348 IPR016461 GO:0008168
Prci12g1242 359 FunFam Caffeic acid 3-O-methyltransferase 2 109 - -
Prci12g1242 359 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 115 344 IPR029063 -
Prci12g1242 359 Gene3D Vaccinia Virus protein VP39 110 359 IPR029063 -
Prci12g1242 359 PIRSF O-mtase 2 359 IPR016461 GO:0008168
Prci12g1242 359 Pfam Dimerisation domain 29 78 IPR012967 GO:0046983
Prci12g1242 359 SUPERFAMILY "Winged helix" DNA-binding domain 14 114 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g1242 Prci-Chr12 24590314 24593222 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g1242 12 359 Monolignol Biosynthesis Gene Families AT5G54160 49.714 3.50e-113 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g1242 - - qsu:112031144 402.905