Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g1230 ATGGAGAAGCACAAGTGCAAGCTCTGCTTGAGAAACTTCTCTAATGGCAGGGCCTTGGGAGGTCACATGAGGTCTCACATGGTGAACCTTCCTATTCCTCCAAAACCAGAGGACCCACCACCACCGCCATTAGTCCAACTCAGCTTCGAGGCCGAGTCTGCTTCGTCGTCTTCATCATCGTCCTCGGAAGAAGAAGAAGATGATAAAGGTCTCTGCTATGGCCTCAGAGAGAACCCTAAGAGAAGCTTTCGCCTTGTGGATCCAGAATTTTCTTTCCCCGTCGTAGAATCCGCCTCTGTAATTCTTCAAGACAGAGAAAGCGAGACTGAGTCGTCCAAGAACCCAACTAGAACAAGATCCAAAAGGGCATGTAATAATAACCAATTCCACCATCATCCGAAGAAGATGAAACCAAGTAATGATCATCATCATAATCATCACCATCATCATCACAGTAAGAACAAGACTGAGCCGTCTTGGGTTGAACCTGAACTGTTGAGTTCGGTTTCTAATGCGACCACCGAGGAAGATGTCGCATTTTGTCTTATGATGTTGTCGAGGGACAAATGGAAGAGACAGGAAGTAAAAGACGAAGAAGAAGACGAAGAGGAAGAGGAAGCAGAAGACGACGAGGAGGACGAGGAAGACGACGAAGGAGACAGATCTGTGGAAGATTCTGAGGAATTCTATGACGAGATGAAATCATCCAAGACGCGATCATCCGTTCGTGGAAGGTACAAATGCGAGACGTGCAAGAAAGCGTTTCGATCATATCAAGCATTGGGAGGTCACAGAGCGAGTCACAAAAAAATCAAATCGGTCATATGTGAACCGGAAATTGAGCATGAAAATAATGCTCCCATGGTGGCCGAGAAGAAAATTCATGAATGTCCAGTTTGTTTCAGAGTGTTCGCTTCAGGTCAAGCTCTTGGAGGCCACAAGCGAACGCACGTGACTGGTTCTGCAACTCCGGTTCGAACCCCACCAACCAAGTTCGGAGATAACAACAGTTTAATAGATCTTAACCTTCCTGCTCCATTTGAGGAAGATGAGATTAGCCAAATTGAAAATTCTGCAGTTTCTGATGCAGAATTCCTCAAACCCAGTTCCCATATCGCTGGGGCACAAGTAGCTTGA 1137 0.4617 MEKHKCKLCLRNFSNGRALGGHMRSHMVNLPIPPKPEDPPPPPLVQLSFEAESASSSSSSSSEEEEDDKGLCYGLRENPKRSFRLVDPEFSFPVVESASVILQDRESETESSKNPTRTRSKRACNNNQFHHHPKKMKPSNDHHHNHHHHHHSKNKTEPSWVEPELLSSVSNATTEEDVAFCLMMLSRDKWKRQEVKDEEEDEEEEEAEDDEEDEEDDEGDRSVEDSEEFYDEMKSSKTRSSVRGRYKCETCKKAFRSYQALGGHRASHKKIKSVICEPEIEHENNAPMVAEKKIHECPVCFRVFASGQALGGHKRTHVTGSATPVRTPPTKFGDNNSLIDLNLPAPFEEDEISQIENSAVSDAEFLKPSSHIAGAQVA 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g1230 378 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Prci12g1230 378 MobiDBLite consensus disorder prediction 124 154 - -
Prci12g1230 378 SMART c2h2final6 246 268 IPR013087 -
Prci12g1230 378 SMART c2h2final6 4 26 IPR013087 -
Prci12g1230 378 SMART c2h2final6 295 317 IPR013087 -
Prci12g1230 378 ProSiteProfiles Zinc finger C2H2 type domain profile. 246 273 IPR013087 -
Prci12g1230 378 MobiDBLite consensus disorder prediction 313 335 - -
Prci12g1230 378 MobiDBLite consensus disorder prediction 103 164 - -
Prci12g1230 378 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 368 IPR044303 GO:0006355
Prci12g1230 378 Gene3D Classic Zinc Finger 243 317 - -
Prci12g1230 378 ProSiteProfiles Zinc finger C2H2 type domain profile. 295 322 IPR013087 -
Prci12g1230 378 ProSitePatterns Zinc finger C2H2 type domain signature. 297 317 IPR013087 -
Prci12g1230 378 Coils Coil 192 217 - -
Prci12g1230 378 SUPERFAMILY beta-beta-alpha zinc fingers 245 317 IPR036236 -
Prci12g1230 378 ProSitePatterns Zinc finger C2H2 type domain signature. 248 268 IPR013087 -
Prci12g1230 378 MobiDBLite consensus disorder prediction 197 226 - -
Prci12g1230 378 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Prci12g1230 378 MobiDBLite consensus disorder prediction 191 237 - -
Prci12g1230 378 Pfam C2H2-type zinc finger 4 27 - -
Prci12g1230 378 Pfam C2H2-type zinc finger 295 317 - -
Prci12g1230 378 Pfam C2H2-type zinc finger 245 270 - -
Prci12g1230 378 MobiDBLite consensus disorder prediction 320 335 - -
Prci12g1230 378 MobiDBLite consensus disorder prediction 32 46 - -
Prci12g1230 378 MobiDBLite consensus disorder prediction 25 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g1230 Prci-Chr12 22719334 22721024 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g1230 1 355 C2H2 Transcription Factor Family AT3G60580 42.541 4.47e-65 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci12g1230 zf-C2H2_6 4.7e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g1230 - - qsa:O6P43_017371 380.948